-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~funannotate/test/fun/predict_misc/EVM/scaffold_179

-reading genomic sequence.

** Processing features (+)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: +)
-loading gene prediction evidence. (strand: +)Couldn't classify 9104, 9244
Sorry, prediction snap_scaffold_179-snap.3-T1 fails validation.
(ATG)	 TT	6163-6210	GT	AGG
(CAA)	 AG	9104-9244	GT	AAG
-recovered snap_scaffold_179-snap.3-T1, initial, 6163, 6210
-recovered snap_scaffold_179-snap.3-T1, internal, 9104, 9244
Valid prediction for snap_scaffold_179-snap.1-T1
Valid prediction for GlimmerHMM_glimmerT_59962-T1

-loading the search evidence (protein and EST search results, strand: +)
-scoring exons (strand: +)

** Processing features (-)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: -)
-loading gene prediction evidence. (strand: -)Couldn't classify 1243, 1412
Sorry, prediction GlimmerHMM_glimmerT_59963-T1 fails validation.
(ACT)	 AG	1243-1412	GT	TGG
(GCT)	 AG	1574-1729	GT	AGG
(ACC)	 AG	5979-6086	GT	AGG
(GCA)	 AG	9104-9121	GG	AGG
-recovered GlimmerHMM_glimmerT_59963-T1, terminal, 9104, 9121
-recovered GlimmerHMM_glimmerT_59963-T1, internal, 1243, 1412
-recovered GlimmerHMM_glimmerT_59963-T1, internal, 1574, 1729
-recovered GlimmerHMM_glimmerT_59963-T1, internal, 5979, 6086
Couldn't classify 1243, 1412
Couldn't classify 10250, 10322
Sorry, prediction snap_scaffold_179-snap.2-T1 fails validation.
(ACT)	 AG	1243-1412	GT	TGG
(GCT)	 AG	1574-1729	GT	AGG
(GAA)	 AG	5155-5256	GT	GAG
(ACC)	 AG	5979-6086	GT	AGG
(GTG)	 AG	10250-10322	GT	AGG
-recovered snap_scaffold_179-snap.2-T1, internal, 1243, 1412
-recovered snap_scaffold_179-snap.2-T1, internal, 1574, 1729
-recovered snap_scaffold_179-snap.2-T1, internal, 5155, 5256
-recovered snap_scaffold_179-snap.2-T1, internal, 5979, 6086
-recovered snap_scaffold_179-snap.2-T1, internal, 10250, 10322
Couldn't classify 10250, 10322
Sorry, prediction Augustus_model.g39714.t1 fails validation.
(ATG)	 TC	1272-1412	GT	TGG
(GCT)	 AG	1574-1729	GT	AGG
(GGA)	 AG	3648-3714	GT	GGG
(TTA)	 AG	3892-4028	GT	GAG
(ACC)	 AG	5979-6086	GT	AGG
(GTG)	 AG	10250-10322	GT	AGG
-recovered Augustus_model.g39714.t1, initial, 1272, 1412
-recovered Augustus_model.g39714.t1, internal, 1574, 1729
-recovered Augustus_model.g39714.t1, internal, 3648, 3714
-recovered Augustus_model.g39714.t1, internal, 3892, 4028
-recovered Augustus_model.g39714.t1, internal, 5979, 6086
-recovered Augustus_model.g39714.t1, internal, 10250, 10322

-loading the search evidence (protein and EST search results, strand: -)
-scoring exons (strand: -)Error with prediction: snap lend_intergenic: 5533, rend_intergenic: 191  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 9270, rend_intergenic: 6163  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.

-building DP trellis

-building trellis in range 1 - 10512
-exon list size: 19


building trellis

4.8    
9.5    
14.3    
19.0    
23.8    
28.6    
33.3    
38.1    
42.9    
47.6    
52.4    
57.1    
61.9    
66.7    
71.4    
76.2    
81.0    
85.7    
90.5    
95.2    
-found 1 predictions from path traversal
Error with prediction: snap lend_intergenic: 5533, rend_intergenic: 191  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 9270, rend_intergenic: 6163  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
GOT 5prime partial gene.

-reporting highest scoring path thru the trellis.
-found 0 predictions persist after filtering for low support