-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~funannotate/test/fun/predict_misc/EVM/scaffold_1786

-reading genomic sequence.

** Processing features (+)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: +)
-loading gene prediction evidence. (strand: +)Couldn't classify 389, 603
Sorry, prediction snap_scaffold_1786-snap.2-T1 fails validation.
(GAG)	 AG	389-603	GT	AGG
(GGT)	 AG	1360-1618	GG	GAG
add_exon() Sorry, snap_scaffold_1786-snap.2-T1 389-603-terminal-2 is invalid.
-recovered snap_scaffold_1786-snap.2-T1, terminal, 389, 603
-recovered snap_scaffold_1786-snap.2-T1, terminal, 1360, 1618
-recovered snap_scaffold_1786-snap.2-T1, internal, 389, 603

-loading the search evidence (protein and EST search results, strand: +)
-scoring exons (strand: +)

** Processing features (-)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: -)
-loading gene prediction evidence. (strand: -)Valid prediction for GlimmerHMM_glimmerT_61320-T1
Couldn't classify 1290, 1601
Sorry, prediction snap_scaffold_1786-snap.1-T1 fails validation.
(ATG)	 CC	30-641	GT	AGG
(AGA)	 AG	689-742	GT	AGG
(GTG)	 AG	1290-1601	GT	CGG
-recovered snap_scaffold_1786-snap.1-T1, initial, 30, 641
-recovered snap_scaffold_1786-snap.1-T1, internal, 689, 742
-recovered snap_scaffold_1786-snap.1-T1, internal, 1290, 1601
Couldn't classify 1290, 1601
Sorry, prediction Augustus_model.g40642.t1 fails validation.
(ATG)	 CC	30-641	GT	AGG
(GTG)	 AG	1290-1601	GT	CGG
-recovered Augustus_model.g40642.t1, initial, 30, 641
-recovered Augustus_model.g40642.t1, internal, 1290, 1601
Couldn't classify 18, 641
Couldn't classify 1290, 1337
Sorry, prediction pasa_asmbl_19562.p2 fails validation.
(CCC)	 CC	18-641	GT	AGG
(GTG)	 AG	1290-1337	GA	TGG

-loading the search evidence (protein and EST search results, strand: -)
-scoring exons (strand: -)Error with prediction: snap lend_intergenic: 1914, rend_intergenic: 389  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.

-building DP trellis

-building trellis in range 1 - 1943
-exon list size: 10


building trellis

8.3    
16.7    
25.0    
33.3    
41.7    
50.0    
58.3    
66.7    
75.0    
83.3    
91.7    
-found 1 predictions from path traversal
Error with prediction: snap lend_intergenic: 1914, rend_intergenic: 389  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.

-reporting highest scoring path thru the trellis.
-found 1 predictions persist after filtering for low support