-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~funannotate/test/fun/predict_misc/EVM/scaffold_1782

-reading genomic sequence.

** Processing features (+)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: +)
-loading gene prediction evidence. (strand: +)
-loading the search evidence (protein and EST search results, strand: +)
-scoring exons (strand: +)

** Processing features (-)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: -)
-loading gene prediction evidence. (strand: -)Couldn't classify 841, 943
Couldn't classify 1436, 1731
Sorry, prediction pasa_asmbl_19561.p1 fails validation.
(GGC)	 CA	841-943	GT	AGG
(GCC)	 AG	1436-1731	AA	TGA
Valid prediction for Augustus_model.g40640.t1
Couldn't classify 842, 943
Sorry, prediction snap_scaffold_1782-snap.1-T1 fails validation.
(GCT)	 AG	842-943	GT	AGG
(GCC)	 AG	1436-1857	TT	GAT
-recovered snap_scaffold_1782-snap.1-T1, terminal, 1436, 1857
-recovered snap_scaffold_1782-snap.1-T1, internal, 842, 943
Couldn't classify 842, 943
Sorry, prediction GlimmerHMM_glimmerT_61318-T1 fails validation.
(GCT)	 AG	842-943	GT	AGG
(GCC)	 AG	1436-1857	TT	GAT
-recovered GlimmerHMM_glimmerT_61318-T1, terminal, 1436, 1857
-recovered GlimmerHMM_glimmerT_61318-T1, internal, 842, 943

-loading the search evidence (protein and EST search results, strand: -)
-scoring exons (strand: -)
-building DP trellis

-building trellis in range 1 - 1949
-exon list size: 4


building trellis

16.7    
33.3    
50.0    
66.7    
83.3    
-found 1 predictions from path traversal
GOT 5prime partial gene.

-reporting highest scoring path thru the trellis.
-found 1 predictions persist after filtering for low support