-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~funannotate/test/fun/predict_misc/EVM/scaffold_1779 -reading genomic sequence. ** Processing features (+) -finding all potential splice sites, looking for GT/GC donors and AG acceptors. -finding all potential starts and stops. (strand: +) -loading gene prediction evidence. (strand: +) -loading the search evidence (protein and EST search results, strand: +) -scoring exons (strand: +) ** Processing features (-) -finding all potential splice sites, looking for GT/GC donors and AG acceptors. -finding all potential starts and stops. (strand: -) -loading gene prediction evidence. (strand: -)Couldn't classify 1610, 1651 Sorry, prediction snap_scaffold_1779-snap.1-T1 fails validation. (ATG) GG 892-977 GT AAG (CCC) AG 1153-1258 GT AGG (GTC) AG 1610-1651 GT AAG -recovered snap_scaffold_1779-snap.1-T1, initial, 892, 977 -recovered snap_scaffold_1779-snap.1-T1, internal, 1153, 1258 -recovered snap_scaffold_1779-snap.1-T1, internal, 1610, 1651 Couldn't classify 106, 242 Sorry, prediction snap_scaffold_1779-snap.2-T1 fails validation. (AAA) AG 106-242 GT AGG (AGT) AG 290-376 AG AAA -recovered snap_scaffold_1779-snap.2-T1, terminal, 290, 376 -recovered snap_scaffold_1779-snap.2-T1, internal, 106, 242 Couldn't classify 154, 247 Couldn't classify 1153, 1258 Sorry, prediction Augustus_model.g40638.t1 fails validation. (CTG) AG 154-247 GT AGG (CCC) AG 1153-1258 GT AGG -recovered Augustus_model.g40638.t1, internal, 154, 247 -recovered Augustus_model.g40638.t1, internal, 1153, 1258 Valid prediction for GlimmerHMM_glimmerT_61317-T1 add_exon() Sorry, GlimmerHMM_glimmerT_61317-T1 1153-1369-terminal-1 is invalid. -loading the search evidence (protein and EST search results, strand: -) -scoring exons (strand: -) -building DP trellis -building trellis in range 1 - 1953 -exon list size: 11 building trellis 7.7 15.4 23.1 30.8 38.5 46.2 53.8 61.5 69.2 76.9 84.6 92.3 -found 2 predictions from path traversal GOT 5prime partial gene. -reporting highest scoring path thru the trellis. -found 2 predictions persist after filtering for low support