-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~funannotate/test/fun/predict_misc/EVM/scaffold_177

-reading genomic sequence.

** Processing features (+)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: +)
-loading gene prediction evidence. (strand: +)
-loading the search evidence (protein and EST search results, strand: +)
-scoring exons (strand: +)

** Processing features (-)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: -)
-loading gene prediction evidence. (strand: -)Valid prediction for snap_scaffold_177-snap.3-T1
Valid prediction for snap_scaffold_177-snap.1-T1
Valid prediction for snap_scaffold_177-snap.2-T1
Couldn't classify 1692, 1862
Sorry, prediction GlimmerHMM_glimmerT_59960-T1 fails validation.
(GTT)	 AG	1692-1862	GT	AGG
(GTT)	 AG	5573-5743	GT	AGG
(GTT)	 AG	7678-7870	TA	AGT
-recovered GlimmerHMM_glimmerT_59960-T1, terminal, 7678, 7870
-recovered GlimmerHMM_glimmerT_59960-T1, internal, 1692, 1862
-recovered GlimmerHMM_glimmerT_59960-T1, internal, 5573, 5743
Valid prediction for Augustus_model.g39712.t1
Valid prediction for snap_scaffold_177-snap.4-T1

-loading the search evidence (protein and EST search results, strand: -)
-scoring exons (strand: -)
-building DP trellis

-building trellis in range 1 - 10577
-exon list size: 15


building trellis

5.9    
11.8    
17.6    
23.5    
29.4    
35.3    
41.2    
47.1    
52.9    
58.8    
64.7    
70.6    
76.5    
82.4    
88.2    
94.1    
-found 2 predictions from path traversal
GOT 5prime partial gene.

-reporting highest scoring path thru the trellis.
-found 2 predictions persist after filtering for low support