-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~funannotate/test/fun/predict_misc/EVM/scaffold_1766

-reading genomic sequence.

** Processing features (+)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: +)
-loading gene prediction evidence. (strand: +)Couldn't classify 239, 307
Couldn't classify 1218, 1370
Sorry, prediction snap_scaffold_1766-snap.2-T1 fails validation.
(AGC)	 AG	239-307	GT	ATG
(GTA)	 AG	1218-1370	GT	GGG
-recovered snap_scaffold_1766-snap.2-T1, internal, 239, 307
-recovered snap_scaffold_1766-snap.2-T1, internal, 1218, 1370

-loading the search evidence (protein and EST search results, strand: +)
-scoring exons (strand: +)

** Processing features (-)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: -)
-loading gene prediction evidence. (strand: -)Valid prediction for Augustus_model.g40635.t1
Valid prediction for GlimmerHMM_glimmerT_61312-T1
Couldn't classify 165, 279
Couldn't classify 1723, 1752
Sorry, prediction snap_scaffold_1766-snap.1-T1 fails validation.
(AGA)	 AG	165-279	GT	AGG
(AGG)	 AG	548-764	GT	AGG
(GCT)	 AG	1723-1752	GT	AGG
-recovered snap_scaffold_1766-snap.1-T1, internal, 165, 279
-recovered snap_scaffold_1766-snap.1-T1, internal, 548, 764
-recovered snap_scaffold_1766-snap.1-T1, internal, 1723, 1752

-loading the search evidence (protein and EST search results, strand: -)
-scoring exons (strand: -)Error with prediction: snap lend_intergenic: 1799, rend_intergenic: 239  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.

-building DP trellis

-building trellis in range 1 - 1963
-exon list size: 12


building trellis

7.1    
14.3    
21.4    
28.6    
35.7    
42.9    
50.0    
57.1    
64.3    
71.4    
78.6    
85.7    
92.9    
-found 1 predictions from path traversal
Error with prediction: snap lend_intergenic: 1799, rend_intergenic: 239  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.

-reporting highest scoring path thru the trellis.
-found 1 predictions persist after filtering for low support