-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~funannotate/test/fun/predict_misc/EVM/scaffold_1764

-reading genomic sequence.

** Processing features (+)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: +)
-loading gene prediction evidence. (strand: +)Couldn't classify 113, 216
Sorry, prediction snap_scaffold_1764-snap.1-T1 fails validation.
(ATC)	 AG	113-216	GT	ATG
(CCG)	 AG	485-600	GT	AGG
(GCA)	 AG	1639-1732	GT	AGG
(CCA)	 AG	1761-1840	GA	GAG
-recovered snap_scaffold_1764-snap.1-T1, terminal, 1761, 1840
-recovered snap_scaffold_1764-snap.1-T1, internal, 113, 216
-recovered snap_scaffold_1764-snap.1-T1, internal, 485, 600
-recovered snap_scaffold_1764-snap.1-T1, internal, 1639, 1732
Couldn't classify 113, 216
Sorry, prediction Augustus_model.g40633.t1 fails validation.
(ATC)	 AG	113-216	GT	ATG
(CCG)	 AG	485-600	GT	AGG
(ACA)	 AG	951-959	AC	AGA
-recovered Augustus_model.g40633.t1, terminal, 951, 959
-recovered Augustus_model.g40633.t1, internal, 113, 216
-recovered Augustus_model.g40633.t1, internal, 485, 600

-loading the search evidence (protein and EST search results, strand: +)
-scoring exons (strand: +)

** Processing features (-)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: -)
-loading gene prediction evidence. (strand: -)Valid prediction for snap_scaffold_1764-snap.2-T1
Valid prediction for GlimmerHMM_glimmerT_61311-T1
add_exon() Sorry, GlimmerHMM_glimmerT_61311-T1 221-474-terminal-1 is invalid.

-loading the search evidence (protein and EST search results, strand: -)
-scoring exons (strand: -)Error with prediction: snap lend_intergenic: 1840, rend_intergenic: 120  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.

-building DP trellis

-building trellis in range 1 - 1969
-exon list size: 8


building trellis

10.0    
20.0    
30.0    
40.0    
50.0    
60.0    
70.0    
80.0    
90.0    
-found 1 predictions from path traversal
Error with prediction: snap lend_intergenic: 1840, rend_intergenic: 120  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
GOT 5prime partial gene.

-reporting highest scoring path thru the trellis.
-found 1 predictions persist after filtering for low support