-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~funannotate/test/fun/predict_misc/EVM/scaffold_176

-reading genomic sequence.

** Processing features (+)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: +)
-loading gene prediction evidence. (strand: +)
-loading the search evidence (protein and EST search results, strand: +)
-scoring exons (strand: +)

** Processing features (-)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: -)
-loading gene prediction evidence. (strand: -)Couldn't classify 2151, 2234
Couldn't classify 9041, 9637
Sorry, prediction snap_scaffold_176-snap.1-T1 fails validation.
(ATC)	 AG	2151-2234	GT	TGG
(GAG)	 AG	2565-2696	GT	AGG
(CAT)	 AG	3414-3773	GT	GGG
(GGA)	 AG	4815-5056	GT	GGG
(TTG)	 AG	5789-5818	GT	AGG
(ACC)	 AG	8048-8075	GT	AGG
(CTC)	 AG	9041-9637	GT	GTG
-recovered snap_scaffold_176-snap.1-T1, internal, 2151, 2234
-recovered snap_scaffold_176-snap.1-T1, internal, 2565, 2696
-recovered snap_scaffold_176-snap.1-T1, internal, 3414, 3773
-recovered snap_scaffold_176-snap.1-T1, internal, 4815, 5056
-recovered snap_scaffold_176-snap.1-T1, internal, 5789, 5818
-recovered snap_scaffold_176-snap.1-T1, internal, 8048, 8075
-recovered snap_scaffold_176-snap.1-T1, internal, 9041, 9637
Couldn't classify 2550, 2683
Sorry, prediction GlimmerHMM_glimmerT_59959-T1 fails validation.
(GTG)	 AG	2550-2683	GT	AGG
(GTT)	 AG	4805-4909	GT	GAG
(TTC)	 AG	9082-9669	GG	GAG
-recovered GlimmerHMM_glimmerT_59959-T1, terminal, 9082, 9669
-recovered GlimmerHMM_glimmerT_59959-T1, internal, 2550, 2683
-recovered GlimmerHMM_glimmerT_59959-T1, internal, 4805, 4909

-loading the search evidence (protein and EST search results, strand: -)
-scoring exons (strand: -)
-building DP trellis

-building trellis in range 1 - 10611
-exon list size: 17


building trellis

5.3    
10.5    
15.8    
21.1    
26.3    
31.6    
36.8    
42.1    
47.4    
52.6    
57.9    
63.2    
68.4    
73.7    
78.9    
84.2    
89.5    
94.7    
-found 1 predictions from path traversal

-reporting highest scoring path thru the trellis.
-found 1 predictions persist after filtering for low support