-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~funannotate/test/fun/predict_misc/EVM/scaffold_175

-reading genomic sequence.

** Processing features (+)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: +)
-loading gene prediction evidence. (strand: +)Valid prediction for snap_scaffold_175-snap.1-T1

-loading the search evidence (protein and EST search results, strand: +)
-scoring exons (strand: +)

** Processing features (-)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: -)
-loading gene prediction evidence. (strand: -)Valid prediction for Augustus_model.g39711.t1
Valid prediction for snap_scaffold_175-snap.3-T1
Couldn't classify 2510, 2745
Sorry, prediction GlimmerHMM_glimmerT_59958-T1 fails validation.
(GAG)	 AG	2510-2745	GT	CAG
(AGA)	 AG	3799-3977	GT	GCG
(GAT)	 AG	4704-4943	TG	GAT
-recovered GlimmerHMM_glimmerT_59958-T1, terminal, 4704, 4943
-recovered GlimmerHMM_glimmerT_59958-T1, internal, 2510, 2745
-recovered GlimmerHMM_glimmerT_59958-T1, internal, 3799, 3977
Valid prediction for pasa_asmbl_19553.p1
Valid prediction for snap_scaffold_175-snap.2-T1

-loading the search evidence (protein and EST search results, strand: -)
-scoring exons (strand: -)Error with prediction: snap lend_intergenic: 2379, rend_intergenic: 858  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.

-building DP trellis

-building trellis in range 1 - 10802
-exon list size: 21


building trellis

4.3    
8.7    
13.0    
17.4    
21.7    
26.1    
30.4    
34.8    
39.1    
43.5    
47.8    
52.2    
56.5    
60.9    
65.2    
69.6    
73.9    
78.3    
82.6    
87.0    
91.3    
95.7    
-found 2 predictions from path traversal
Error with prediction: snap lend_intergenic: 2379, rend_intergenic: 858  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.

-reporting highest scoring path thru the trellis.
-found 2 predictions persist after filtering for low support