-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~funannotate/test/fun/predict_misc/EVM/scaffold_1746

-reading genomic sequence.

** Processing features (+)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: +)
-loading gene prediction evidence. (strand: +)Couldn't classify 35, 74
Sorry, prediction snap_scaffold_1746-snap.2-T1 fails validation.
(CTC)	 AG	35-74	GT	GGG
(TCG)	 AG	728-830	GT	TGG
(TAG)	 AG	1467-1558	AA	AAA
-recovered snap_scaffold_1746-snap.2-T1, terminal, 1467, 1558
-recovered snap_scaffold_1746-snap.2-T1, internal, 35, 74
-recovered snap_scaffold_1746-snap.2-T1, internal, 728, 830

-loading the search evidence (protein and EST search results, strand: +)
-scoring exons (strand: +)

** Processing features (-)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: -)
-loading gene prediction evidence. (strand: -)Valid prediction for GlimmerHMM_glimmerT_61303-T1
Couldn't classify 234, 371
Couldn't classify 1758, 1899
Sorry, prediction Augustus_model.g40629.t1 fails validation.
(GAT)	 AG	234-371	GT	AGG
(GTG)	 AG	481-623	GT	AGG
(CGC)	 AG	794-865	GT	GTG
(GGT)	 AG	1204-1327	GT	TTG
(GTG)	 AG	1758-1899	GT	AGG
-recovered Augustus_model.g40629.t1, internal, 234, 371
-recovered Augustus_model.g40629.t1, internal, 481, 623
-recovered Augustus_model.g40629.t1, internal, 794, 865
-recovered Augustus_model.g40629.t1, internal, 1204, 1327
-recovered Augustus_model.g40629.t1, internal, 1758, 1899
Couldn't classify 234, 371
Couldn't classify 1904, 1989
Sorry, prediction snap_scaffold_1746-snap.1-T1 fails validation.
(GAT)	 AG	234-371	GT	AGG
(GTG)	 AG	481-623	GT	AGG
(CGC)	 AG	794-865	GT	GTG
(GGT)	 AG	1204-1327	GT	TTG
(GTG)	 AG	1758-1899	GT	AGG
(AGC)	 AG	1904-1989	GT	AGG
-recovered snap_scaffold_1746-snap.1-T1, internal, 234, 371
-recovered snap_scaffold_1746-snap.1-T1, internal, 481, 623
-recovered snap_scaffold_1746-snap.1-T1, internal, 794, 865
-recovered snap_scaffold_1746-snap.1-T1, internal, 1204, 1327
-recovered snap_scaffold_1746-snap.1-T1, internal, 1758, 1899
-recovered snap_scaffold_1746-snap.1-T1, internal, 1904, 1989
Sorry, intron length (3) is less than minimum required (10)
Couldn't classify 234, 371
Sorry, prediction GlimmerHMM_glimmerT_61304-T1 fails validation.
(GAT)	 AG	234-371	GT	AGG
(GTG)	 AG	481-623	GT	AGG
(CGC)	 AG	794-869	GA	AAG
-recovered GlimmerHMM_glimmerT_61304-T1, terminal, 794, 869
-recovered GlimmerHMM_glimmerT_61304-T1, internal, 234, 371
-recovered GlimmerHMM_glimmerT_61304-T1, internal, 481, 623

-loading the search evidence (protein and EST search results, strand: -)
-scoring exons (strand: -)Error with prediction: snap lend_intergenic: 1760, rend_intergenic: 35  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.

-building DP trellis

-building trellis in range 1 - 1993
-exon list size: 15


building trellis

5.9    
11.8    
17.6    
23.5    
29.4    
35.3    
41.2    
47.1    
52.9    
58.8    
64.7    
70.6    
76.5    
82.4    
88.2    
94.1    
-found 1 predictions from path traversal
Error with prediction: snap lend_intergenic: 1760, rend_intergenic: 35  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
GOT 5prime partial gene.

-reporting highest scoring path thru the trellis.
-found 1 predictions persist after filtering for low support