-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~funannotate/test/fun/predict_misc/EVM/scaffold_1744

-reading genomic sequence.

** Processing features (+)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: +)
-loading gene prediction evidence. (strand: +)Valid prediction for snap_scaffold_1744-snap.1-T1
add_exon() Sorry, snap_scaffold_1744-snap.1-T1 666-1236-terminal-1 is invalid.
Valid prediction for GlimmerHMM_glimmerT_61302-T1
add_exon() Sorry, GlimmerHMM_glimmerT_61302-T1 666-1236-terminal-1 is invalid.
Couldn't classify 425, 479
Sorry, prediction Augustus_model.g40628.t1 fails validation.
(TGC)	 AG	425-479	GT	GGG
(GTC)	 AG	587-1236	GA	GAG
-recovered Augustus_model.g40628.t1, terminal, 587, 1236
-recovered Augustus_model.g40628.t1, internal, 425, 479

-loading the search evidence (protein and EST search results, strand: +)
-scoring exons (strand: +)

** Processing features (-)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: -)
-loading gene prediction evidence. (strand: -)
-loading the search evidence (protein and EST search results, strand: -)
-scoring exons (strand: -)
-building DP trellis

-building trellis in range 1 - 2000
-exon list size: 4


building trellis

16.7    
33.3    
50.0    
66.7    
83.3    
-found 1 predictions from path traversal
GOT 5prime partial gene.

-reporting highest scoring path thru the trellis.
-found 1 predictions persist after filtering for low support