-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~funannotate/test/fun/predict_misc/EVM/scaffold_1741

-reading genomic sequence.

** Processing features (+)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: +)
-loading gene prediction evidence. (strand: +)Couldn't classify 743, 949
Sorry, prediction GlimmerHMM_glimmerT_61301-T1 fails validation.
(ATG)	 CC	513-611	GT	TGG
(GCG)	 AG	743-949	GT	AGG
-recovered GlimmerHMM_glimmerT_61301-T1, initial, 513, 611
-recovered GlimmerHMM_glimmerT_61301-T1, internal, 743, 949
Couldn't classify 502, 611
Sorry, prediction Augustus_model.g40627.t1 fails validation.
(CTC)	 AG	502-611	GT	TGG
(GCG)	 AG	743-949	GT	AGG
(AAC)	 AG	1365-1418	AG	AGA
-recovered Augustus_model.g40627.t1, terminal, 1365, 1418
-recovered Augustus_model.g40627.t1, internal, 502, 611
-recovered Augustus_model.g40627.t1, internal, 743, 949
Couldn't classify 502, 611
Couldn't classify 743, 949
Sorry, prediction snap_scaffold_1741-snap.1-T1 fails validation.
(CTC)	 AG	502-611	GT	TGG
(GCG)	 AG	743-949	GT	AGG
-recovered snap_scaffold_1741-snap.1-T1, internal, 502, 611
-recovered snap_scaffold_1741-snap.1-T1, internal, 743, 949

-loading the search evidence (protein and EST search results, strand: +)
-scoring exons (strand: +)

** Processing features (-)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: -)
-loading gene prediction evidence. (strand: -)
-loading the search evidence (protein and EST search results, strand: -)
-scoring exons (strand: -)
-building DP trellis

-building trellis in range 1 - 2000
-exon list size: 5


building trellis

14.3    
28.6    
42.9    
57.1    
71.4    
85.7    
-found 1 predictions from path traversal
GOT 5prime partial gene.

-reporting highest scoring path thru the trellis.
-found 1 predictions persist after filtering for low support