-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~funannotate/test/fun/predict_misc/EVM/scaffold_1733

-reading genomic sequence.

** Processing features (+)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: +)
-loading gene prediction evidence. (strand: +)Couldn't classify 446, 543
Couldn't classify 1389, 1521
Sorry, prediction snap_scaffold_1733-snap.1-T1 fails validation.
(GCC)	 AG	446-543	GT	AGG
(GCT)	 AG	805-931	GT	ACG
(CCA)	 AG	1389-1521	GT	CTG
-recovered snap_scaffold_1733-snap.1-T1, internal, 446, 543
-recovered snap_scaffold_1733-snap.1-T1, internal, 805, 931
-recovered snap_scaffold_1733-snap.1-T1, internal, 1389, 1521
Couldn't classify 1389, 1521
Sorry, prediction GlimmerHMM_glimmerT_61298-T1 fails validation.
(ATG)	 AG	466-543	GT	AGG
(GCT)	 AG	805-931	GT	ACG
(CCA)	 AG	1389-1521	GT	CTG
-recovered GlimmerHMM_glimmerT_61298-T1, initial, 466, 543
-recovered GlimmerHMM_glimmerT_61298-T1, internal, 466, 543
-recovered GlimmerHMM_glimmerT_61298-T1, internal, 805, 931
-recovered GlimmerHMM_glimmerT_61298-T1, internal, 1389, 1521
Couldn't classify 446, 543
Sorry, prediction Augustus_model.g40624.t1 fails validation.
(GCC)	 AG	446-543	GT	AGG
(GCT)	 AG	805-931	GT	ACG
(CCA)	 AG	1389-1525	GT	AGG
-recovered Augustus_model.g40624.t1, terminal, 1389, 1525
-recovered Augustus_model.g40624.t1, internal, 446, 543
-recovered Augustus_model.g40624.t1, internal, 805, 931
-recovered Augustus_model.g40624.t1, internal, 1389, 1525

-loading the search evidence (protein and EST search results, strand: +)
-scoring exons (strand: +)

** Processing features (-)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: -)
-loading gene prediction evidence. (strand: -)
-loading the search evidence (protein and EST search results, strand: -)
-scoring exons (strand: -)
-building DP trellis

-building trellis in range 1 - 2000
-exon list size: 10


building trellis

8.3    
16.7    
25.0    
33.3    
41.7    
50.0    
58.3    
66.7    
75.0    
83.3    
91.7    
-found 1 predictions from path traversal
GOT 5prime partial gene.

-reporting highest scoring path thru the trellis.
-found 1 predictions persist after filtering for low support