-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~funannotate/test/fun/predict_misc/EVM/scaffold_1732

-reading genomic sequence.

** Processing features (+)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: +)
-loading gene prediction evidence. (strand: +)Couldn't classify 357, 616
Sorry, prediction snap_scaffold_1732-snap.1-T1 fails validation.
(GAG)	 AG	357-616	GT	CCG
(GAT)	 AG	664-739	GT	ACG
(ATG)	 AG	908-1027	GT	AGG
(GCT)	 AG	1555-1582	CG	AAC
add_exon() Sorry, snap_scaffold_1732-snap.1-T1 908-1027-initial-1 is invalid.
-recovered snap_scaffold_1732-snap.1-T1, initial, 908, 1027
-recovered snap_scaffold_1732-snap.1-T1, terminal, 1555, 1582
-recovered snap_scaffold_1732-snap.1-T1, internal, 357, 616
-recovered snap_scaffold_1732-snap.1-T1, internal, 664, 739
-recovered snap_scaffold_1732-snap.1-T1, internal, 908, 1027

-loading the search evidence (protein and EST search results, strand: +)
-scoring exons (strand: +)

** Processing features (-)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: -)
-loading gene prediction evidence. (strand: -)
-loading the search evidence (protein and EST search results, strand: -)
-scoring exons (strand: -)
-building DP trellis

-building trellis in range 1 - 2000
-exon list size: 5


building trellis

14.3    
28.6    
42.9    
57.1    
71.4    
85.7    
-found 1 predictions from path traversal
GOT 5prime partial gene.

-reporting highest scoring path thru the trellis.
-found 0 predictions persist after filtering for low support