-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~funannotate/test/fun/predict_misc/EVM/scaffold_173

-reading genomic sequence.

** Processing features (+)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: +)
-loading gene prediction evidence. (strand: +)Couldn't classify 3, 228
Sorry, prediction pasa_asmbl_19550.p1 fails validation.
(CCT)	 CC	3-228	GT	TGG
(GTG)	 AG	778-911	TC	GAT
-recovered pasa_asmbl_19550.p1, terminal, 778, 911
Couldn't classify 1, 228
Sorry, prediction Augustus_model.g39707.t1 fails validation.
(CCC)	 CC	1-228	GT	TGG
(GTG)	 AG	778-854	GT	TGG
(TCC)	 AG	1941-1988	AG	AGA
-recovered Augustus_model.g39707.t1, terminal, 1941, 1988
-recovered Augustus_model.g39707.t1, internal, 778, 854
Valid prediction for GlimmerHMM_glimmerT_59954-T1
add_exon() Sorry, GlimmerHMM_glimmerT_59954-T1 5027-5219-terminal-1 is invalid.
Couldn't classify 10347, 10545
Sorry, prediction snap_scaffold_173-snap.2-T1 fails validation.
(ATG)	 TA	1863-1984	GT	AAG
(AGA)	 AG	5027-5212	GT	GGG
(AAA)	 AG	8704-8735	GT	AGG
(ATT)	 AG	8998-9538	GT	AGG
(AAA)	 AG	10347-10545	GT	GGG
-recovered snap_scaffold_173-snap.2-T1, initial, 1863, 1984
-recovered snap_scaffold_173-snap.2-T1, internal, 5027, 5212
-recovered snap_scaffold_173-snap.2-T1, internal, 8704, 8735
-recovered snap_scaffold_173-snap.2-T1, internal, 8998, 9538
-recovered snap_scaffold_173-snap.2-T1, internal, 10347, 10545

-loading the search evidence (protein and EST search results, strand: +)
-scoring exons (strand: +)

** Processing features (-)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: -)
-loading gene prediction evidence. (strand: -)Valid prediction for GlimmerHMM_glimmerT_59955-T1
Couldn't classify 363, 480
Sorry, prediction snap_scaffold_173-snap.1-T1 fails validation.
(GTG)	 AG	363-480	GT	GGG
(ATG)	 AG	1129-1196	GT	CGG
(AGC)	 AG	3953-4047	GT	CGG
(CTA)	 AG	4376-4489	GT	TTG
(AAG)	 AG	4534-4611	GT	TGG
(GCC)	 AG	7391-7483	GT	AGG
(AAG)	 AG	10058-10153	GA	AAG
add_exon() Sorry, snap_scaffold_173-snap.1-T1 1129-1196-initial-1 is invalid.
-recovered snap_scaffold_173-snap.1-T1, initial, 1129, 1196
-recovered snap_scaffold_173-snap.1-T1, terminal, 10058, 10153
-recovered snap_scaffold_173-snap.1-T1, internal, 363, 480
-recovered snap_scaffold_173-snap.1-T1, internal, 1129, 1196
-recovered snap_scaffold_173-snap.1-T1, internal, 3953, 4047
-recovered snap_scaffold_173-snap.1-T1, internal, 4376, 4489
-recovered snap_scaffold_173-snap.1-T1, internal, 4534, 4611
-recovered snap_scaffold_173-snap.1-T1, internal, 7391, 7483
Valid prediction for Augustus_model.g39708.t1

-loading the search evidence (protein and EST search results, strand: -)
-scoring exons (strand: -)Error with prediction: snap lend_intergenic: 10555, rend_intergenic: 1863  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.

-building DP trellis

-building trellis in range 1 - 10917
-exon list size: 23


building trellis

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-found 2 predictions from path traversal
Error with prediction: snap lend_intergenic: 10555, rend_intergenic: 1863  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
GOT 5prime partial gene.

-reporting highest scoring path thru the trellis.
-found 1 predictions persist after filtering for low support