-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~funannotate/test/fun/predict_misc/EVM/scaffold_1727

-reading genomic sequence.

** Processing features (+)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: +)
-loading gene prediction evidence. (strand: +)
-loading the search evidence (protein and EST search results, strand: +)
-scoring exons (strand: +)

** Processing features (-)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: -)
-loading gene prediction evidence. (strand: -)Couldn't classify 1296, 1457
Couldn't classify 1800, 1947
Sorry, prediction snap_scaffold_1727-snap.1-T1 fails validation.
(ATA)	 AG	1296-1457	GT	TGG
(GTT)	 AG	1800-1947	GT	TGG
-recovered snap_scaffold_1727-snap.1-T1, internal, 1296, 1457
-recovered snap_scaffold_1727-snap.1-T1, internal, 1800, 1947
Valid prediction for GlimmerHMM_glimmerT_61296-T1
add_exon() Sorry, GlimmerHMM_glimmerT_61296-T1 1296-1461-terminal-1 is invalid.
Couldn't classify 1800, 1947
Sorry, prediction Augustus_model.g40622.t1 fails validation.
(ATG)	 AG	970-1016	GT	GTG
(ATA)	 AG	1296-1457	GT	TGG
(GTT)	 AG	1800-1947	GT	TGG
-recovered Augustus_model.g40622.t1, initial, 970, 1016
-recovered Augustus_model.g40622.t1, internal, 970, 1016
-recovered Augustus_model.g40622.t1, internal, 1296, 1457
-recovered Augustus_model.g40622.t1, internal, 1800, 1947
Couldn't classify 1294, 1457
Couldn't classify 1800, 1947
Sorry, prediction pasa_asmbl_19549.p1 fails validation.
(AGA)	 TT	1294-1457	GT	TGG
(GTT)	 AG	1800-1947	GT	TGG
-recovered pasa_asmbl_19549.p1, internal, 1800, 1947

-loading the search evidence (protein and EST search results, strand: -)
-scoring exons (strand: -)
-building DP trellis

-building trellis in range 1 - 2000
-exon list size: 5


building trellis

14.3    
28.6    
42.9    
57.1    
71.4    
85.7    
-found 1 predictions from path traversal
GOT 5prime partial gene.

-reporting highest scoring path thru the trellis.
-found 1 predictions persist after filtering for low support