-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~funannotate/test/fun/predict_misc/EVM/scaffold_172

-reading genomic sequence.

** Processing features (+)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: +)
-loading gene prediction evidence. (strand: +)Couldn't classify 10622, 10762
Sorry, prediction Augustus_model.g39706.t1 fails validation.
(ATG)	 CA	7444-7461	GT	AAG
(GCT)	 AG	8047-8226	GT	ATG
(GTG)	 AG	9075-9287	GT	AGG
(GGT)	 AG	10226-10369	GT	CGG
(ATC)	 AG	10622-10762	GT	AGG
-recovered Augustus_model.g39706.t1, initial, 7444, 7461
-recovered Augustus_model.g39706.t1, internal, 8047, 8226
-recovered Augustus_model.g39706.t1, internal, 9075, 9287
-recovered Augustus_model.g39706.t1, internal, 10226, 10369
-recovered Augustus_model.g39706.t1, internal, 10622, 10762
Couldn't classify 10622, 10762
Sorry, prediction GlimmerHMM_glimmerT_59953-T1 fails validation.
(ATG)	 TC	7390-7404	GT	AGG
(GCT)	 AG	8047-8226	GT	ATG
(GTG)	 AG	9075-9287	GT	AGG
(GGT)	 AG	10226-10369	GT	CGG
(ATC)	 AG	10622-10762	GT	AGG
-recovered GlimmerHMM_glimmerT_59953-T1, initial, 7390, 7404
-recovered GlimmerHMM_glimmerT_59953-T1, internal, 8047, 8226
-recovered GlimmerHMM_glimmerT_59953-T1, internal, 9075, 9287
-recovered GlimmerHMM_glimmerT_59953-T1, internal, 10226, 10369
-recovered GlimmerHMM_glimmerT_59953-T1, internal, 10622, 10762
Couldn't classify 57, 96
Sorry, prediction Augustus_model.g39705.t1 fails validation.
(TCC)	 AG	57-96	GT	AGG
(TGC)	 AG	628-818	AG	GAA
-recovered Augustus_model.g39705.t1, terminal, 628, 818
-recovered Augustus_model.g39705.t1, internal, 57, 96
Couldn't classify 57, 96
Couldn't classify 10622, 10762
Sorry, prediction snap_scaffold_172-snap.1-T1 fails validation.
(TCC)	 AG	57-96	GT	AGG
(TGC)	 AG	628-773	GT	AGG
(AGG)	 AG	2638-2718	GT	TGG
(GCT)	 AG	8047-8226	GT	ATG
(GTG)	 AG	9075-9287	GT	AGG
(GGT)	 AG	10226-10369	GT	CGG
(ATC)	 AG	10622-10762	GT	AGG
-recovered snap_scaffold_172-snap.1-T1, internal, 57, 96
-recovered snap_scaffold_172-snap.1-T1, internal, 628, 773
-recovered snap_scaffold_172-snap.1-T1, internal, 2638, 2718
-recovered snap_scaffold_172-snap.1-T1, internal, 8047, 8226
-recovered snap_scaffold_172-snap.1-T1, internal, 9075, 9287
-recovered snap_scaffold_172-snap.1-T1, internal, 10226, 10369
-recovered snap_scaffold_172-snap.1-T1, internal, 10622, 10762
Valid prediction for GlimmerHMM_glimmerT_59952-T1
add_exon() Sorry, GlimmerHMM_glimmerT_59952-T1 628-818-terminal-1 is invalid.

-loading the search evidence (protein and EST search results, strand: +)
-scoring exons (strand: +)

** Processing features (-)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: -)
-loading gene prediction evidence. (strand: -)
-loading the search evidence (protein and EST search results, strand: -)
-scoring exons (strand: -)
-building DP trellis

-building trellis in range 1 - 10917
-exon list size: 15


building trellis

5.9    
11.8    
17.6    
23.5    
29.4    
35.3    
41.2    
47.1    
52.9    
58.8    
64.7    
70.6    
76.5    
82.4    
88.2    
94.1    
-found 2 predictions from path traversal
GOT 5prime partial gene.

-reporting highest scoring path thru the trellis.
-found 2 predictions persist after filtering for low support