-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~funannotate/test/fun/predict_misc/EVM/scaffold_1718

-reading genomic sequence.

** Processing features (+)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: +)
-loading gene prediction evidence. (strand: +)
-loading the search evidence (protein and EST search results, strand: +)
-scoring exons (strand: +)

** Processing features (-)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: -)
-loading gene prediction evidence. (strand: -)Couldn't classify 195, 355
Couldn't classify 980, 1255
Sorry, prediction snap_scaffold_1718-snap.1-T1 fails validation.
(CCC)	 AG	195-355	GT	AGG
(ATC)	 AG	666-749	GT	GTG
(CCT)	 AG	980-1255	GT	AGG
-recovered snap_scaffold_1718-snap.1-T1, internal, 195, 355
-recovered snap_scaffold_1718-snap.1-T1, internal, 666, 749
-recovered snap_scaffold_1718-snap.1-T1, internal, 980, 1255
Valid prediction for GlimmerHMM_glimmerT_61291-T1
Couldn't classify 195, 355
Sorry, prediction GlimmerHMM_glimmerT_61292-T1 fails validation.
(CCC)	 AG	195-355	GT	AGG
(ATC)	 AG	666-776	CA	AAC
-recovered GlimmerHMM_glimmerT_61292-T1, terminal, 666, 776
-recovered GlimmerHMM_glimmerT_61292-T1, internal, 195, 355
Couldn't classify 195, 355
Couldn't classify 973, 1255
Sorry, prediction Augustus_model.g40617.t1 fails validation.
(CCC)	 AG	195-355	GT	AGG
(ATC)	 AG	666-769	GT	AGG
(CCT)	 AG	973-1255	GT	AGG
-recovered Augustus_model.g40617.t1, internal, 195, 355
-recovered Augustus_model.g40617.t1, internal, 666, 769
-recovered Augustus_model.g40617.t1, internal, 973, 1255

-loading the search evidence (protein and EST search results, strand: -)
-scoring exons (strand: -)
-building DP trellis

-building trellis in range 1 - 2008
-exon list size: 11


building trellis

7.7    
15.4    
23.1    
30.8    
38.5    
46.2    
53.8    
61.5    
69.2    
76.9    
84.6    
92.3    
-found 2 predictions from path traversal
GOT 5prime partial gene.

-reporting highest scoring path thru the trellis.
-found 2 predictions persist after filtering for low support