-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~funannotate/test/fun/predict_misc/EVM/scaffold_1716

-reading genomic sequence.

** Processing features (+)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: +)
-loading gene prediction evidence. (strand: +)
-loading the search evidence (protein and EST search results, strand: +)
-scoring exons (strand: +)

** Processing features (-)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: -)
-loading gene prediction evidence. (strand: -)Couldn't classify 193, 249
Sorry, prediction GlimmerHMM_glimmerT_61290-T1 fails validation.
(CGA)	 AG	193-249	GT	AGG
(GTA)	 AG	545-680	GA	AAG
-recovered GlimmerHMM_glimmerT_61290-T1, terminal, 545, 680
-recovered GlimmerHMM_glimmerT_61290-T1, internal, 193, 249
Couldn't classify 193, 249
Couldn't classify 545, 858
Sorry, prediction snap_scaffold_1716-snap.1-T1 fails validation.
(CGA)	 AG	193-249	GT	AGG
(GTA)	 AG	545-858	GT	AGG
-recovered snap_scaffold_1716-snap.1-T1, internal, 193, 249
-recovered snap_scaffold_1716-snap.1-T1, internal, 545, 858
Couldn't classify 193, 249
Sorry, prediction Augustus_model.g40616.t1 fails validation.
(CGA)	 AG	193-249	GT	AGG
(GTA)	 AG	545-858	GT	AGG
(GGT)	 AG	1753-1836	CT	AGC
-recovered Augustus_model.g40616.t1, terminal, 1753, 1836
-recovered Augustus_model.g40616.t1, internal, 193, 249
-recovered Augustus_model.g40616.t1, internal, 545, 858

-loading the search evidence (protein and EST search results, strand: -)
-scoring exons (strand: -)
-building DP trellis

-building trellis in range 1 - 2011
-exon list size: 7


building trellis

11.1    
22.2    
33.3    
44.4    
55.6    
66.7    
77.8    
88.9    
-found 1 predictions from path traversal
GOT 5prime partial gene.

-reporting highest scoring path thru the trellis.
-found 1 predictions persist after filtering for low support