-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~funannotate/test/fun/predict_misc/EVM/scaffold_1706

-reading genomic sequence.

** Processing features (+)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: +)
-loading gene prediction evidence. (strand: +)Valid prediction for GlimmerHMM_glimmerT_61288-T1
add_exon() Sorry, GlimmerHMM_glimmerT_61288-T1 785-966-terminal-1 is invalid.
Couldn't classify 1940, 2016
Sorry, prediction snap_scaffold_1706-snap.1-T1 fails validation.
(ATG)	 TG	57-123	GT	AGG
(TTC)	 AG	344-394	GT	GGG
(AGC)	 AG	785-937	GT	GGG
(CTA)	 AG	1342-1524	GT	AGG
(GCA)	 AG	1940-2016	GT	AGG
-recovered snap_scaffold_1706-snap.1-T1, initial, 57, 123
-recovered snap_scaffold_1706-snap.1-T1, internal, 344, 394
-recovered snap_scaffold_1706-snap.1-T1, internal, 785, 937
-recovered snap_scaffold_1706-snap.1-T1, internal, 1342, 1524
-recovered snap_scaffold_1706-snap.1-T1, internal, 1940, 2016
Couldn't classify 799, 937
Couldn't classify 1940, 2001
Sorry, prediction pasa_asmbl_19545.p1 fails validation.
(CTG)	 GT	799-937	GT	GGG
(CTA)	 AG	1342-1524	GT	AGG
(GCA)	 AG	1940-2001	GA	TCG
-recovered pasa_asmbl_19545.p1, internal, 1342, 1524
Couldn't classify 72, 123
Sorry, prediction Augustus_model.g40612.t1 fails validation.
(CTC)	 AG	72-123	GT	AGG
(TTC)	 AG	344-394	GT	GGG
(AGC)	 AG	785-937	GT	GGG
(CTA)	 AG	1342-1524	GT	AGG
(GCA)	 AG	1940-2026		AG
add_exon() Sorry, Augustus_model.g40612.t1 1940-2026-terminal-1 is invalid.
-recovered Augustus_model.g40612.t1, terminal, 1940, 2026
-recovered Augustus_model.g40612.t1, internal, 72, 123
-recovered Augustus_model.g40612.t1, internal, 344, 394
-recovered Augustus_model.g40612.t1, internal, 785, 937
-recovered Augustus_model.g40612.t1, internal, 1342, 1524

-loading the search evidence (protein and EST search results, strand: +)
-scoring exons (strand: +)

** Processing features (-)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: -)
-loading gene prediction evidence. (strand: -)
-loading the search evidence (protein and EST search results, strand: -)
-scoring exons (strand: -)
-building DP trellis

-building trellis in range 1 - 2026
-exon list size: 8


building trellis

10.0    
20.0    
30.0    
40.0    
50.0    
60.0    
70.0    
80.0    
90.0    
-found 1 predictions from path traversal
GOT 5prime partial gene.

-reporting highest scoring path thru the trellis.
-found 1 predictions persist after filtering for low support