-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~funannotate/test/fun/predict_misc/EVM/scaffold_1702

-reading genomic sequence.

** Processing features (+)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: +)
-loading gene prediction evidence. (strand: +)Couldn't classify 417, 519
Sorry, prediction Augustus_model.g40610.t1 fails validation.
(GAG)	 AG	417-519	GT	AGG
(TGT)	 AG	823-838	GT	AGG
(GAC)	 AG	1343-1348	TT	AAT
-recovered Augustus_model.g40610.t1, terminal, 1343, 1348
-recovered Augustus_model.g40610.t1, internal, 417, 519
-recovered Augustus_model.g40610.t1, internal, 823, 838

-loading the search evidence (protein and EST search results, strand: +)
-scoring exons (strand: +)

** Processing features (-)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: -)
-loading gene prediction evidence. (strand: -)Couldn't classify 887, 1056
Sorry, prediction snap_scaffold_1702-snap.1-T1 fails validation.
(GTG)	 AG	887-1056	GT	AGG
(CAA)	 AG	1483-1718	CG	GAC
-recovered snap_scaffold_1702-snap.1-T1, terminal, 1483, 1718
-recovered snap_scaffold_1702-snap.1-T1, internal, 887, 1056
Valid prediction for GlimmerHMM_glimmerT_61285-T1
add_exon() Sorry, GlimmerHMM_glimmerT_61285-T1 1463-1718-terminal-1 is invalid.

-loading the search evidence (protein and EST search results, strand: -)
-scoring exons (strand: -)
-building DP trellis

-building trellis in range 1 - 2030
-exon list size: 9


building trellis

9.1    
18.2    
27.3    
36.4    
45.5    
54.5    
63.6    
72.7    
81.8    
90.9    
-found 1 predictions from path traversal
GOT 5prime partial gene.

-reporting highest scoring path thru the trellis.
-found 1 predictions persist after filtering for low support