-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~funannotate/test/fun/predict_misc/EVM/scaffold_1700

-reading genomic sequence.

** Processing features (+)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: +)
-loading gene prediction evidence. (strand: +)
-loading the search evidence (protein and EST search results, strand: +)
-scoring exons (strand: +)

** Processing features (-)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: -)
-loading gene prediction evidence. (strand: -)Couldn't classify 22, 173
Sorry, prediction GlimmerHMM_glimmerT_61284-T1 fails validation.
(GAG)	 AG	22-173	GT	AGG
(GAG)	 AG	260-652	AG	AGA
-recovered GlimmerHMM_glimmerT_61284-T1, terminal, 260, 652
-recovered GlimmerHMM_glimmerT_61284-T1, internal, 22, 173
Couldn't classify 480, 530
Couldn't classify 1867, 1971
Sorry, prediction Augustus_model.g40609.t1 fails validation.
(GGG)	 AG	480-530	GT	TTG
(ATC)	 AG	1867-1971	GT	TGG
-recovered Augustus_model.g40609.t1, internal, 480, 530
-recovered Augustus_model.g40609.t1, internal, 1867, 1971
Couldn't classify 43, 173
Couldn't classify 1867, 1971
Sorry, prediction snap_scaffold_1700-snap.1-T1 fails validation.
(GAG)	 AG	43-173	GT	AGG
(ATC)	 AG	1867-1971	GT	TGG
-recovered snap_scaffold_1700-snap.1-T1, internal, 43, 173
-recovered snap_scaffold_1700-snap.1-T1, internal, 1867, 1971

-loading the search evidence (protein and EST search results, strand: -)
-scoring exons (strand: -)
-building DP trellis

-building trellis in range 1 - 2031
-exon list size: 9


building trellis

9.1    
18.2    
27.3    
36.4    
45.5    
54.5    
63.6    
72.7    
81.8    
90.9    
-found 1 predictions from path traversal
GOT 5prime partial gene.

-reporting highest scoring path thru the trellis.
-found 1 predictions persist after filtering for low support