-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~funannotate/test/fun/predict_misc/EVM/scaffold_17/scaffold_17_7522493-7747551

-reading genomic sequence.

** Processing features (+)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: +)
-loading gene prediction evidence. (strand: +)Valid prediction for snap_scaffold_17-snap.1518-T1
Valid prediction for Augustus_model.g27036.t1
Valid prediction for GlimmerHMM_glimmerT_40566-T1
Valid prediction for GlimmerHMM_glimmerT_40568-T1
Valid prediction for snap_scaffold_17-snap.1482-T1
Valid prediction for snap_scaffold_17-snap.1507-T1
Valid prediction for snap_scaffold_17-snap.1499-T1
Valid prediction for snap_scaffold_17-snap.1501-T1
Valid prediction for HiQ_model.g27050.t1
Valid prediction for Augustus_model.g27042.t1
Valid prediction for snap_scaffold_17-snap.1497-T1
Valid prediction for CodingQuarry_transcript_22033-T1
Valid prediction for Augustus_model.g27049.t1
Valid prediction for Augustus_model.g27040.t1
Valid prediction for snap_scaffold_17-snap.1488-T1
Valid prediction for GlimmerHMM_glimmerT_40582-T1
Valid prediction for Augustus_model.g27041.t1
Valid prediction for snap_scaffold_17-snap.1478-T1
Valid prediction for snap_scaffold_17-snap.1520-T1
Valid prediction for Augustus_model.g27039.t1
Valid prediction for snap_scaffold_17-snap.1519-T1
Valid prediction for snap_scaffold_17-snap.1485-T1
Valid prediction for snap_scaffold_17-snap.1490-T1
Valid prediction for Augustus_model.g27052.t1
Couldn't classify 96620, 96748
Couldn't classify 100216, 100383
Sorry, prediction pasa_asmbl_18912.p1 fails validation.
(GTG)	 CA	96620-96748	GT	AGG
(GTG)	 AG	97673-97774	GT	TGG
(GGG)	 AG	100216-100383	TC	GGT
-recovered pasa_asmbl_18912.p1, internal, 97673, 97774
Valid prediction for snap_scaffold_17-snap.1481-T1
Valid prediction for snap_scaffold_17-snap.1515-T1
Valid prediction for GlimmerHMM_glimmerT_40579-T1
Valid prediction for snap_scaffold_17-snap.1509-T1
Valid prediction for snap_scaffold_17-snap.1480-T1
Valid prediction for snap_scaffold_17-snap.1512-T1
Valid prediction for Augustus_model.g27043.t1
Valid prediction for Augustus_model.g27053.t1
Valid prediction for snap_scaffold_17-snap.1516-T1
Valid prediction for snap_scaffold_17-snap.1504-T1
Valid prediction for GlimmerHMM_glimmerT_40577-T1
Valid prediction for GlimmerHMM_glimmerT_40560-T1
Valid prediction for snap_scaffold_17-snap.1510-T1
Valid prediction for pasa_asmbl_18917.p1
Valid prediction for snap_scaffold_17-snap.1491-T1
Valid prediction for GlimmerHMM_glimmerT_40565-T1
Valid prediction for GlimmerHMM_glimmerT_40578-T1
Valid prediction for GlimmerHMM_glimmerT_40575-T1
Valid prediction for GlimmerHMM_glimmerT_40576-T1
Valid prediction for snap_scaffold_17-snap.1493-T1
Valid prediction for Augustus_model.g27051.t1
Valid prediction for GlimmerHMM_glimmerT_40562-T1
Valid prediction for snap_scaffold_17-snap.1506-T1
Valid prediction for GlimmerHMM_glimmerT_40583-T1
Valid prediction for GlimmerHMM_glimmerT_40569-T1
Valid prediction for snap_scaffold_17-snap.1494-T1

-loading the search evidence (protein and EST search results, strand: +)
-scoring exons (strand: +)

** Processing features (-)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: -)
-loading gene prediction evidence. (strand: -)Valid prediction for snap_scaffold_17-snap.1479-T1
Valid prediction for snap_scaffold_17-snap.1496-T1
Valid prediction for snap_scaffold_17-snap.1484-T1
Valid prediction for GlimmerHMM_glimmerT_40573-T1
Valid prediction for snap_scaffold_17-snap.1511-T1
Valid prediction for GlimmerHMM_glimmerT_40580-T1
Valid prediction for Augustus_model.g27054.t1
Valid prediction for Augustus_model.g27035.t1
Valid prediction for Augustus_model.g27056.t1
Valid prediction for Augustus_model.g27055.t1
Valid prediction for GlimmerHMM_glimmerT_40567-T1
Valid prediction for snap_scaffold_17-snap.1503-T1
Valid prediction for GlimmerHMM_glimmerT_40571-T1
Valid prediction for GlimmerHMM_glimmerT_40584-T1
Valid prediction for GlimmerHMM_glimmerT_40572-T1
Valid prediction for snap_scaffold_17-snap.1517-T1
Valid prediction for snap_scaffold_17-snap.1513-T1
Valid prediction for Augustus_model.g27048.t1
Valid prediction for snap_scaffold_17-snap.1502-T1
Valid prediction for Augustus_model.g27044.t1
Valid prediction for snap_scaffold_17-snap.1508-T1
Valid prediction for GlimmerHMM_glimmerT_40581-T1
Valid prediction for Augustus_model.g27045.t1
Valid prediction for snap_scaffold_17-snap.1483-T1
Valid prediction for GlimmerHMM_glimmerT_40561-T1
Valid prediction for snap_scaffold_17-snap.1505-T1
Valid prediction for snap_scaffold_17-snap.1489-T1
Valid prediction for snap_scaffold_17-snap.1492-T1
Valid prediction for snap_scaffold_17-snap.1487-T1
Valid prediction for Augustus_model.g27037.t1
Valid prediction for snap_scaffold_17-snap.1514-T1
Valid prediction for snap_scaffold_17-snap.1498-T1
Valid prediction for snap_scaffold_17-snap.1495-T1
Sorry, intron length (4) is less than minimum required (10)
Valid prediction for GlimmerHMM_glimmerT_40570-T1
Valid prediction for GlimmerHMM_glimmerT_40563-T1
Valid prediction for Augustus_model.g27046.t1
Valid prediction for snap_scaffold_17-snap.1500-T1
Sorry, intron length (4) is less than minimum required (10)
Valid prediction for Augustus_model.g27047.t1
Valid prediction for snap_scaffold_17-snap.1486-T1
Valid prediction for Augustus_model.g27038.t1
Valid prediction for GlimmerHMM_glimmerT_40564-T1
Valid prediction for GlimmerHMM_glimmerT_40574-T1

-loading the search evidence (protein and EST search results, strand: -)
-scoring exons (strand: -)Error with prediction: snap lend_intergenic: 13338, rend_intergenic: 12028  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 33847, rend_intergenic: 13393  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 43411, rend_intergenic: 37771  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 60782, rend_intergenic: 57385  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 75154, rend_intergenic: 68601  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 102611, rend_intergenic: 96565  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 127489, rend_intergenic: 123573  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 135269, rend_intergenic: 131617  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 143902, rend_intergenic: 140259  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 149005, rend_intergenic: 148276  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 159603, rend_intergenic: 155716  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 169593, rend_intergenic: 160689  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 173116, rend_intergenic: 169693  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 174889, rend_intergenic: 173586  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 176174, rend_intergenic: 175479  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 192575, rend_intergenic: 191182  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 212209, rend_intergenic: 201372  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.

-building DP trellis

-building trellis in range 1 - 225059
-exon list size: 375


building trellis

0.3    
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1.1    
1.3    
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1.9    
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8.0    
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9.0    
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10.1    
10.3    
10.6    
10.9    
11.1    
11.4    
11.7    
11.9    
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14.9    
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16.7    
17.0    
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17.8    
18.0    
18.3    
18.6    
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19.1    
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22.0    
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23.1    
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23.6    
23.9    
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24.4    
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26.0    
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26.5    
26.8    
27.1    
27.3    
27.6    
27.9    
28.1    
28.4    
28.6    
28.9    
29.2    
29.4    
29.7    
30.0    
30.2    
30.5    
30.8    
31.0    
31.3    
31.6    
31.8    
32.1    
32.4    
32.6    
32.9    
33.2    
33.4    
33.7    
34.0    
34.2    
34.5    
34.7    
35.0    
35.3    
35.5    
35.8    
36.1    
36.3    
36.6    
36.9    
37.1    
37.4    
37.7    
37.9    
38.2    
38.5    
38.7    
39.0    
39.3    
39.5    
39.8    
40.1    
40.3    
40.6    
40.8    
41.1    
41.4    
41.6    
41.9    
42.2    
42.4    
42.7    
43.0    
43.2    
43.5    
43.8    
44.0    
44.3    
44.6    
44.8    
45.1    
45.4    
45.6    
45.9    
46.2    
46.4    
46.7    
46.9    
47.2    
47.5    
47.7    
48.0    
48.3    
48.5    
48.8    
49.1    
49.3    
49.6    
49.9    
50.1    
50.4    
50.7    
50.9    
51.2    
51.5    
51.7    
52.0    
52.3    
52.5    
52.8    
53.1    
53.3    
53.6    
53.8    
54.1    
54.4    
54.6    
54.9    
55.2    
55.4    
55.7    
56.0    
56.2    
56.5    
56.8    
57.0    
57.3    
57.6    
57.8    
58.1    
58.4    
58.6    
58.9    
59.2    
59.4    
59.7    
59.9    
60.2    
60.5    
60.7    
61.0    
61.3    
61.5    
61.8    
62.1    
62.3    
62.6    
62.9    
63.1    
63.4    
63.7    
63.9    
64.2    
64.5    
64.7    
65.0    
65.3    
65.5    
65.8    
66.0    
66.3    
66.6    
66.8    
67.1    
67.4    
67.6    
67.9    
68.2    
68.4    
68.7    
69.0    
69.2    
69.5    
69.8    
70.0    
70.3    
70.6    
70.8    
71.1    
71.4    
71.6    
71.9    
72.1    
72.4    
72.7    
72.9    
73.2    
73.5    
73.7    
74.0    
74.3    
74.5    
74.8    
75.1    
75.3    
75.6    
75.9    
76.1    
76.4    
76.7    
76.9    
77.2    
77.5    
77.7    
78.0    
78.2    
78.5    
78.8    
79.0    
79.3    
79.6    
79.8    
80.1    
80.4    
80.6    
80.9    
81.2    
81.4    
81.7    
82.0    
82.2    
82.5    
82.8    
83.0    
83.3    
83.6    
83.8    
84.1    
84.4    
84.6    
84.9    
85.1    
85.4    
85.7    
85.9    
86.2    
86.5    
86.7    
87.0    
87.3    
87.5    
87.8    
88.1    
88.3    
88.6    
88.9    
89.1    
89.4    
89.7    
89.9    
90.2    
90.5    
90.7    
91.0    
91.2    
91.5    
91.8    
92.0    
92.3    
92.6    
92.8    
93.1    
93.4    
93.6    
93.9    
94.2    
94.4    
94.7    
95.0    
95.2    
95.5    
95.8    
96.0    
96.3    
96.6    
96.8    
97.1    
97.3    
97.6    
97.9    
98.1    
98.4    
98.7    
98.9    
99.2    
99.5    
99.7    
-found 35 predictions from path traversal
Error with prediction: snap lend_intergenic: 13338, rend_intergenic: 12028  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 33847, rend_intergenic: 13393  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 43411, rend_intergenic: 37771  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 60782, rend_intergenic: 57385  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 75154, rend_intergenic: 68601  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 102611, rend_intergenic: 96565  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 127489, rend_intergenic: 123573  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 135269, rend_intergenic: 131617  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 143902, rend_intergenic: 140259  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 149005, rend_intergenic: 148276  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 159603, rend_intergenic: 155716  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 169593, rend_intergenic: 160689  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 173116, rend_intergenic: 169693  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 174889, rend_intergenic: 173586  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 176174, rend_intergenic: 175479  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 192575, rend_intergenic: 191182  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 212209, rend_intergenic: 201372  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.

-reporting highest scoring path thru the trellis.
-found 23 predictions persist after filtering for low support

-building DP trellis

-building trellis in range 1 - 10285
-exon list size: 1


building trellis

33.3    
66.7    
-found 1 predictions from path traversal

-reporting highest scoring path thru the trellis.
-found 0 predictions persist after filtering for low support