-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~funannotate/test/fun/predict_misc/EVM/scaffold_17/scaffold_17_6881234-7101129

-reading genomic sequence.

** Processing features (+)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: +)
-loading gene prediction evidence. (strand: +)Valid prediction for snap_scaffold_17-snap.1394-T1
Valid prediction for snap_scaffold_17-snap.1358-T1
Valid prediction for snap_scaffold_17-snap.1389-T1
Valid prediction for snap_scaffold_17-snap.1369-T1
Valid prediction for CodingQuarry_transcript_22018-T1
Valid prediction for GlimmerHMM_glimmerT_40494-T1
Valid prediction for snap_scaffold_17-snap.1355-T1
Sorry, intron length (7) is less than minimum required (10)
Valid prediction for snap_scaffold_17-snap.1356-T1
Valid prediction for GlimmerHMM_glimmerT_40495-T1
Valid prediction for snap_scaffold_17-snap.1379-T1
Valid prediction for snap_scaffold_17-snap.1362-T1
Valid prediction for HiQ_model.g26999.t1
Valid prediction for HiQ_model.g26994.t1
Valid prediction for GlimmerHMM_glimmerT_40475-T1
Valid prediction for snap_scaffold_17-snap.1361-T1
Couldn't classify 138968, 139753
Sorry, prediction pasa_asmbl_18885.p1 fails validation.
(ATG)	 AG	138968-139753	GA	AAG
Valid prediction for snap_scaffold_17-snap.1359-T1
Valid prediction for pasa_asmbl_18880.p1
Valid prediction for snap_scaffold_17-snap.1365-T1
Valid prediction for snap_scaffold_17-snap.1376-T1
Couldn't classify 134001, 134840
Sorry, prediction pasa_asmbl_18881.p1 fails validation.
(ATG)	 AC	134001-134840	GA	GGG
Valid prediction for GlimmerHMM_glimmerT_40482-T1
Valid prediction for GlimmerHMM_glimmerT_40489-T1
Valid prediction for CodingQuarry_transcript_22017-T1
Couldn't classify 134952, 136196
Sorry, prediction pasa_asmbl_18882.p1 fails validation.
(ATG)	 TT	134952-136196	TT	AGT
Valid prediction for Augustus_model.g26990.t1
Valid prediction for Augustus_model.g26985.t1
Valid prediction for GlimmerHMM_glimmerT_40501-T1
Valid prediction for CodingQuarry_transcript_22022-T1
Valid prediction for GlimmerHMM_glimmerT_40487-T1
Valid prediction for snap_scaffold_17-snap.1386-T1
Valid prediction for pasa_asmbl_18889.p1
Couldn't classify 138224, 138478
Sorry, prediction pasa_asmbl_18884.p1 fails validation.
(ATG)	 AC	137583-138005	GT	AGG
(GAT)	 AG	138224-138478	AT	CCA
-recovered pasa_asmbl_18884.p1, initial, 137583, 138005
Valid prediction for snap_scaffold_17-snap.1387-T1
Valid prediction for GlimmerHMM_glimmerT_40480-T1
Valid prediction for GlimmerHMM_glimmerT_40502-T1
Couldn't classify 136344, 137318
Sorry, prediction pasa_asmbl_18883.p1 fails validation.
(AGA)	 CA	136344-137318	AT	AGA
Valid prediction for GlimmerHMM_glimmerT_40497-T1
Valid prediction for snap_scaffold_17-snap.1393-T1
Valid prediction for Augustus_model.g26989.t1
Valid prediction for pasa_asmbl_18892.p1
Valid prediction for snap_scaffold_17-snap.1364-T1
Valid prediction for CodingQuarry_transcript_22023-T1
Valid prediction for snap_scaffold_17-snap.1357-T1

-loading the search evidence (protein and EST search results, strand: +)
-scoring exons (strand: +)

** Processing features (-)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: -)
-loading gene prediction evidence. (strand: -)Valid prediction for pasa_asmbl_18028.p1
Valid prediction for snap_scaffold_17-snap.1378-T1
Valid prediction for CodingQuarry_transcript_22016-T1
Valid prediction for GlimmerHMM_glimmerT_40500-T1
Valid prediction for GlimmerHMM_glimmerT_40479-T1
Valid prediction for snap_scaffold_17-snap.1368-T1
Valid prediction for GlimmerHMM_glimmerT_40477-T1
Valid prediction for HiQ_model.g26996.t1
Valid prediction for GlimmerHMM_glimmerT_40493-T1
Valid prediction for Augustus_model.g26995.t1
Valid prediction for GlimmerHMM_glimmerT_40488-T1
Couldn't classify 10306, 10357
Couldn't classify 11227, 11303
Sorry, prediction pasa_asmbl_18040.p1 fails validation.
(AAG)	 GG	10306-10357	GT	CAG
(TCT)	 AG	10452-10574	GT	TGG
(AGT)	 AG	10770-10860	GT	AGG
(ACG)	 AG	10991-11079	GT	AGG
(GAC)	 AG	11227-11303	CA	GGC
-recovered pasa_asmbl_18040.p1, internal, 10452, 10574
-recovered pasa_asmbl_18040.p1, internal, 10770, 10860
-recovered pasa_asmbl_18040.p1, internal, 10991, 11079
Valid prediction for GlimmerHMM_glimmerT_40484-T1
Valid prediction for snap_scaffold_17-snap.1383-T1
Valid prediction for snap_scaffold_17-snap.1385-T1
Valid prediction for GlimmerHMM_glimmerT_40491-T1
Valid prediction for snap_scaffold_17-snap.1363-T1
Couldn't classify 45414, 45564
Sorry, prediction pasa_asmbl_18029.p1 fails validation.
(GAA)	 AG	45414-45564	GT	GGG
(CCC)	 AG	45882-45988	GT	AGG
(GTG)	 AG	46223-46354	GT	TGG
(GTC)	 AG	46537-46647	GT	AGG
(TAT)	 AG	46930-46959	CG	AAC
-recovered pasa_asmbl_18029.p1, terminal, 46930, 46959
-recovered pasa_asmbl_18029.p1, internal, 45414, 45564
-recovered pasa_asmbl_18029.p1, internal, 45882, 45988
-recovered pasa_asmbl_18029.p1, internal, 46223, 46354
-recovered pasa_asmbl_18029.p1, internal, 46537, 46647
Valid prediction for pasa_asmbl_18015.p1
Valid prediction for snap_scaffold_17-snap.1367-T1
Valid prediction for CodingQuarry_transcript_22015-T1
Valid prediction for CodingQuarry_transcript_22024-T1
Valid prediction for pasa_asmbl_18034.p1
Valid prediction for Augustus_model.g26983.t1
Valid prediction for Augustus_model.g26980.t1
Valid prediction for CodingQuarry_transcript_22020-T1
Valid prediction for snap_scaffold_17-snap.1382-T1
Valid prediction for Augustus_model.g26979.t1
Valid prediction for GlimmerHMM_glimmerT_40499-T1
Valid prediction for snap_scaffold_17-snap.1395-T1
Valid prediction for HiQ_model.g26984.t1
Valid prediction for GlimmerHMM_glimmerT_40474-T1
Valid prediction for pasa_asmbl_18038.p1
Valid prediction for Augustus_model.g26987.t1
Valid prediction for snap_scaffold_17-snap.1388-T1
Valid prediction for HiQ_model.g26998.t1
Valid prediction for pasa_asmbl_18025.p1
Valid prediction for snap_scaffold_17-snap.1380-T1
Valid prediction for CodingQuarry_transcript_22014-T1
Couldn't classify 212191, 212247
Couldn't classify 214062, 214085
Sorry, prediction pasa_asmbl_18006.p1 fails validation.
(ATT)	 AG	212191-212247	GT	AGG
(GTG)	 AG	212548-212675	GT	AGG
(GCT)	 AG	212983-213076	GT	CTG
(GAC)	 AG	213301-213455	GT	AGG
(AGC)	 AG	213663-213966	GT	AGG
(GAC)	 AG	214062-214085	GG	GGG
-recovered pasa_asmbl_18006.p1, internal, 212191, 212247
-recovered pasa_asmbl_18006.p1, internal, 212548, 212675
-recovered pasa_asmbl_18006.p1, internal, 212983, 213076
-recovered pasa_asmbl_18006.p1, internal, 213301, 213455
-recovered pasa_asmbl_18006.p1, internal, 213663, 213966
Valid prediction for snap_scaffold_17-snap.1390-T1
Valid prediction for GlimmerHMM_glimmerT_40492-T1
Valid prediction for HiQ_model.g26988.t1
Valid prediction for snap_scaffold_17-snap.1372-T1
Valid prediction for HiQ_model.g26997.t1
Valid prediction for Augustus_model.g26986.t1
Valid prediction for snap_scaffold_17-snap.1377-T1
Couldn't classify 7581, 7668
Couldn't classify 9887, 10041
Sorry, prediction pasa_asmbl_18042.p1 fails validation.
(CAG)	 TC	7581-7668	GT	AGG
(AGA)	 AG	8020-8152	GT	AAG
(TGG)	 AG	8525-8673	GT	GGG
(AGT)	 AG	8985-9136	GT	GGG
(GAT)	 AG	9501-9639	GT	TGG
(ATG)	 AG	9887-10041	CA	AGC
-recovered pasa_asmbl_18042.p1, internal, 8020, 8152
-recovered pasa_asmbl_18042.p1, internal, 8525, 8673
-recovered pasa_asmbl_18042.p1, internal, 8985, 9136
-recovered pasa_asmbl_18042.p1, internal, 9501, 9639
Valid prediction for GlimmerHMM_glimmerT_40506-T1
Valid prediction for HiQ_model.g26982.t1
Valid prediction for pasa_asmbl_18036.p1
Valid prediction for snap_scaffold_17-snap.1396-T1
Valid prediction for snap_scaffold_17-snap.1381-T1
Valid prediction for snap_scaffold_17-snap.1391-T1
Valid prediction for GlimmerHMM_glimmerT_40490-T1
Valid prediction for GlimmerHMM_glimmerT_40483-T1
Couldn't classify 136790, 136942
Sorry, prediction pasa_asmbl_18012.p1 fails validation.
(TGC)	 GA	136790-136942	GT	AGG
(ATC)	 AG	137384-137498	GT	TGG
(GGA)	 AG	137737-137877	GT	AGG
(TGG)	 AG	138076-138265	GT	AGG
(GCT)	 AG	138535-138669	GT	AGG
(GGA)	 AG	138783-139209	GA	GAG
-recovered pasa_asmbl_18012.p1, terminal, 138783, 139209
-recovered pasa_asmbl_18012.p1, internal, 137384, 137498
-recovered pasa_asmbl_18012.p1, internal, 137737, 137877
-recovered pasa_asmbl_18012.p1, internal, 138076, 138265
-recovered pasa_asmbl_18012.p1, internal, 138535, 138669
Valid prediction for GlimmerHMM_glimmerT_40486-T1
Valid prediction for CodingQuarry_transcript_22021-T1
Valid prediction for GlimmerHMM_glimmerT_40476-T1
Valid prediction for pasa_asmbl_18010.p1
Valid prediction for snap_scaffold_17-snap.1392-T1
Valid prediction for HiQ_model.g27000.t1
Valid prediction for Augustus_model.g27001.t1
Valid prediction for Augustus_model.g26981.t1
Valid prediction for snap_scaffold_17-snap.1374-T1
Valid prediction for Augustus_model.g26991.t1
Valid prediction for GlimmerHMM_glimmerT_40503-T1
Valid prediction for HiQ_model.g26993.t1
Valid prediction for snap_scaffold_17-snap.1370-T1
Valid prediction for snap_scaffold_17-snap.1360-T1
Valid prediction for CodingQuarry_transcript_22019-T1
Valid prediction for snap_scaffold_17-snap.1375-T1
Valid prediction for snap_scaffold_17-snap.1366-T1
Couldn't classify 70006, 70119
Couldn't classify 72412, 72564
Sorry, prediction pasa_asmbl_18023.p1 fails validation.
(CTT)	 CT	70006-70119	GT	CGG
(GTA)	 AG	70864-70895	GT	GGG
(ACA)	 AG	71001-71066	GT	GCG
(GCC)	 AG	71409-71456	GT	TGG
(GTT)	 AG	71574-71644	GT	CAG
(TTA)	 AG	71783-71856	GT	AGG
(GGT)	 AG	72011-72112	GT	AGG
(GCG)	 AG	72412-72564	CT	GAC
-recovered pasa_asmbl_18023.p1, internal, 70864, 70895
-recovered pasa_asmbl_18023.p1, internal, 71001, 71066
-recovered pasa_asmbl_18023.p1, internal, 71409, 71456
-recovered pasa_asmbl_18023.p1, internal, 71574, 71644
-recovered pasa_asmbl_18023.p1, internal, 71783, 71856
-recovered pasa_asmbl_18023.p1, internal, 72011, 72112
Valid prediction for snap_scaffold_17-snap.1371-T1
Valid prediction for snap_scaffold_17-snap.1384-T1
Valid prediction for snap_scaffold_17-snap.1373-T1
Couldn't classify 132463, 133062
Sorry, prediction pasa_asmbl_18013.p1 fails validation.
(ATG)	 AG	132463-133062	CT	TGC
Couldn't classify 214059, 214190
Couldn't classify 215426, 215491
Sorry, prediction pasa_asmbl_18005.p1 fails validation.
(CAG)	 TC	214059-214190	GT	AGG
(ACA)	 AG	214289-214366	GT	TGG
(GAA)	 AG	214764-214925	GT	CTG
(GAA)	 AG	215089-215193	GT	AGG
(GCA)	 AG	215426-215491	CA	AGC
-recovered pasa_asmbl_18005.p1, internal, 214289, 214366
-recovered pasa_asmbl_18005.p1, internal, 214764, 214925
-recovered pasa_asmbl_18005.p1, internal, 215089, 215193
Valid prediction for CodingQuarry_transcript_22013-T1
Valid prediction for GlimmerHMM_glimmerT_40496-T1
Valid prediction for HiQ_model.g26992.t1
Valid prediction for GlimmerHMM_glimmerT_40485-T1
Valid prediction for pasa_asmbl_18032.p1
Valid prediction for GlimmerHMM_glimmerT_40481-T1
Valid prediction for pasa_asmbl_18018.p1
Valid prediction for GlimmerHMM_glimmerT_40498-T1
Couldn't classify 115802, 115847
Sorry, prediction pasa_asmbl_18505.p1 fails validation.
(TTC)	 AC	115802-115847	GT	TGG
(AAG)	 AG	116039-116162	GT	TGG
(TTC)	 AG	116272-116515	CC	GAC
-recovered pasa_asmbl_18505.p1, terminal, 116272, 116515
-recovered pasa_asmbl_18505.p1, internal, 116039, 116162
Valid prediction for GlimmerHMM_glimmerT_40504-T1
Valid prediction for GlimmerHMM_glimmerT_40478-T1
Valid prediction for GlimmerHMM_glimmerT_40505-T1

-loading the search evidence (protein and EST search results, strand: -)
-scoring exons (strand: -)Error with prediction: snap lend_intergenic: 36381, rend_intergenic: 32172  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 50907, rend_intergenic: 36925  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 59007, rend_intergenic: 52211  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 74314, rend_intergenic: 69888  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 87434, rend_intergenic: 82989  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 92068, rend_intergenic: 87864  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 144973, rend_intergenic: 133935  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 168739, rend_intergenic: 168275  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.

-building DP trellis

-building trellis in range 1 - 219896
-exon list size: 432


building trellis

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-found 32 predictions from path traversal
Error with prediction: snap lend_intergenic: 36381, rend_intergenic: 32172  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 50907, rend_intergenic: 36925  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 59007, rend_intergenic: 52211  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 74314, rend_intergenic: 69888  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 87434, rend_intergenic: 82989  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 92068, rend_intergenic: 87864  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 144973, rend_intergenic: 133935  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 168739, rend_intergenic: 168275  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.

-reporting highest scoring path thru the trellis.
-found 26 predictions persist after filtering for low support