-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~funannotate/test/fun/predict_misc/EVM/scaffold_17/scaffold_17_3026165-3199293

-reading genomic sequence.

** Processing features (+)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: +)
-loading gene prediction evidence. (strand: +)Valid prediction for Augustus_model.g26645.t1
Valid prediction for snap_scaffold_17-snap.638-T1
Valid prediction for snap_scaffold_17-snap.669-T1
Valid prediction for GlimmerHMM_glimmerT_40002-T1
Valid prediction for GlimmerHMM_glimmerT_40003-T1
Valid prediction for snap_scaffold_17-snap.637-T1
Valid prediction for snap_scaffold_17-snap.651-T1
Valid prediction for snap_scaffold_17-snap.653-T1
Valid prediction for snap_scaffold_17-snap.655-T1
Valid prediction for GlimmerHMM_glimmerT_39990-T1
Valid prediction for snap_scaffold_17-snap.660-T1
Couldn't classify 163915, 164108
Sorry, prediction pasa_asmbl_18708.p1 fails validation.
(ACC)	 AG	163915-164108	GT	AGG
(TGA)	 AG	166576-166729	CA	GAC
-recovered pasa_asmbl_18708.p1, terminal, 166576, 166729
-recovered pasa_asmbl_18708.p1, internal, 163915, 164108
Valid prediction for snap_scaffold_17-snap.665-T1
Valid prediction for Augustus_model.g26636.t1
Valid prediction for snap_scaffold_17-snap.670-T1
Valid prediction for GlimmerHMM_glimmerT_40001-T1
Valid prediction for Augustus_model.g26642.t1
Valid prediction for snap_scaffold_17-snap.667-T1
Valid prediction for snap_scaffold_17-snap.643-T1
Valid prediction for snap_scaffold_17-snap.664-T1
Valid prediction for GlimmerHMM_glimmerT_39998-T1
Valid prediction for GlimmerHMM_glimmerT_39995-T1
Valid prediction for Augustus_model.g26635.t1
Valid prediction for Augustus_model.g26637.t1
Valid prediction for snap_scaffold_17-snap.646-T1
Valid prediction for snap_scaffold_17-snap.661-T1
Valid prediction for Augustus_model.g26643.t1
Valid prediction for Augustus_model.g26644.t1
Valid prediction for GlimmerHMM_glimmerT_39994-T1
Valid prediction for snap_scaffold_17-snap.672-T1
Valid prediction for snap_scaffold_17-snap.635-T1
Valid prediction for GlimmerHMM_glimmerT_39989-T1
Valid prediction for snap_scaffold_17-snap.652-T1
Valid prediction for snap_scaffold_17-snap.641-T1
Valid prediction for GlimmerHMM_glimmerT_39996-T1

-loading the search evidence (protein and EST search results, strand: +)
-scoring exons (strand: +)

** Processing features (-)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: -)
-loading gene prediction evidence. (strand: -)Valid prediction for GlimmerHMM_glimmerT_39993-T1
Valid prediction for snap_scaffold_17-snap.671-T1
Valid prediction for GlimmerHMM_glimmerT_39987-T1
Valid prediction for snap_scaffold_17-snap.648-T1
Couldn't classify 161900, 162208
Sorry, prediction pasa_asmbl_17795.p1 fails validation.
(ATG)	 GG	158440-160347	GT	AGG
(GTG)	 AG	161900-162208	GA	GGG
-recovered pasa_asmbl_17795.p1, initial, 158440, 160347
Couldn't classify 158440, 159938
Couldn't classify 159975, 160347
Sorry, prediction CodingQuarry_transcript_21921-T1 fails validation.
(ATG)	 GG	158440-159938	AG	ACA
(CTA)	 AC	159975-160347	GT	AGG
(GTG)	 AG	161900-162490	GG	GAG
-recovered CodingQuarry_transcript_21921-T1, terminal, 161900, 162490
Valid prediction for GlimmerHMM_glimmerT_39997-T1
Valid prediction for snap_scaffold_17-snap.663-T1
Valid prediction for HiQ_model.g26639.t1
Valid prediction for snap_scaffold_17-snap.656-T1
Valid prediction for CodingQuarry_transcript_21922-T1
Valid prediction for snap_scaffold_17-snap.642-T1
Valid prediction for HiQ_model.g26640.t1
Valid prediction for Augustus_model.g26638.t1
Valid prediction for snap_scaffold_17-snap.647-T1
Valid prediction for snap_scaffold_17-snap.649-T1
Valid prediction for snap_scaffold_17-snap.659-T1
Valid prediction for snap_scaffold_17-snap.644-T1
Valid prediction for GlimmerHMM_glimmerT_40000-T1
Couldn't classify 55608, 55717
Couldn't classify 56304, 56416
Sorry, prediction pasa_asmbl_17804.p1 fails validation.
(GTC)	 AG	55608-55717	GT	CGG
(GGA)	 AG	55968-56080	GT	CAG
(CGG)	 AG	56304-56416	AA	AGA
-recovered pasa_asmbl_17804.p1, internal, 55608, 55717
-recovered pasa_asmbl_17804.p1, internal, 55968, 56080
Valid prediction for GlimmerHMM_glimmerT_39991-T1
Valid prediction for snap_scaffold_17-snap.640-T1
Valid prediction for HiQ_model.g26633.t1
Valid prediction for snap_scaffold_17-snap.650-T1
Valid prediction for GlimmerHMM_glimmerT_39992-T1
Valid prediction for snap_scaffold_17-snap.639-T1
Valid prediction for snap_scaffold_17-snap.654-T1
Valid prediction for GlimmerHMM_glimmerT_39999-T1
Valid prediction for Augustus_model.g26641.t1
Valid prediction for Augustus_model.g26634.t1
Valid prediction for pasa_asmbl_17801.p1
Valid prediction for snap_scaffold_17-snap.662-T1
Valid prediction for snap_scaffold_17-snap.636-T1
Couldn't classify 68884, 68921
Sorry, prediction pasa_asmbl_17798.p1 fails validation.
(ACC)	 CC	68884-68921	GT	AAG
(GGA)	 AG	69169-69292	GT	AGG
(ATA)	 AG	70260-70399	GT	GCG
(GTC)	 AG	70634-70778	TA	AGT
-recovered pasa_asmbl_17798.p1, terminal, 70634, 70778
-recovered pasa_asmbl_17798.p1, internal, 69169, 69292
-recovered pasa_asmbl_17798.p1, internal, 70260, 70399
Valid prediction for snap_scaffold_17-snap.645-T1
Valid prediction for snap_scaffold_17-snap.658-T1
Valid prediction for GlimmerHMM_glimmerT_39988-T1
Valid prediction for snap_scaffold_17-snap.666-T1
Valid prediction for GlimmerHMM_glimmerT_39986-T1
Valid prediction for snap_scaffold_17-snap.668-T1
Valid prediction for snap_scaffold_17-snap.657-T1

-loading the search evidence (protein and EST search results, strand: -)
-scoring exons (strand: -)Error with prediction: snap lend_intergenic: 11234, rend_intergenic: 10640  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 14690, rend_intergenic: 11633  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 27682, rend_intergenic: 15308  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 34546, rend_intergenic: 28927  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 47085, rend_intergenic: 36909  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 55267, rend_intergenic: 48161  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 94390, rend_intergenic: 85070  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 131976, rend_intergenic: 128588  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 137329, rend_intergenic: 134508  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 141706, rend_intergenic: 137585  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 146522, rend_intergenic: 142708  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 153089, rend_intergenic: 150779  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 164090, rend_intergenic: 161224  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.

-building DP trellis

-building trellis in range 1 - 173129
-exon list size: 237


building trellis

0.4    
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1.3    
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5.9    
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30.1    
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33.1    
33.5    
33.9    
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34.7    
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35.6    
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41.0    
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41.8    
42.3    
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43.1    
43.5    
43.9    
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44.8    
45.2    
45.6    
46.0    
46.4    
46.9    
47.3    
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48.5    
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49.4    
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50.2    
50.6    
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53.1    
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54.0    
54.4    
54.8    
55.2    
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56.5    
56.9    
57.3    
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58.2    
58.6    
59.0    
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59.8    
60.3    
60.7    
61.1    
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62.3    
62.8    
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63.6    
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64.4    
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65.3    
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66.1    
66.5    
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67.4    
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68.2    
68.6    
69.0    
69.5    
69.9    
70.3    
70.7    
71.1    
71.5    
72.0    
72.4    
72.8    
73.2    
73.6    
74.1    
74.5    
74.9    
75.3    
75.7    
76.2    
76.6    
77.0    
77.4    
77.8    
78.2    
78.7    
79.1    
79.5    
79.9    
80.3    
80.8    
81.2    
81.6    
82.0    
82.4    
82.8    
83.3    
83.7    
84.1    
84.5    
84.9    
85.4    
85.8    
86.2    
86.6    
87.0    
87.4    
87.9    
88.3    
88.7    
89.1    
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90.0    
90.4    
90.8    
91.2    
91.6    
92.1    
92.5    
92.9    
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93.7    
94.1    
94.6    
95.0    
95.4    
95.8    
96.2    
96.7    
97.1    
97.5    
97.9    
98.3    
98.7    
99.2    
99.6    
-found 24 predictions from path traversal
Error with prediction: snap lend_intergenic: 11234, rend_intergenic: 10640  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 14690, rend_intergenic: 11633  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 27682, rend_intergenic: 15308  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 34546, rend_intergenic: 28927  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 47085, rend_intergenic: 36909  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 55267, rend_intergenic: 48161  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 94390, rend_intergenic: 85070  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 131976, rend_intergenic: 128588  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 137329, rend_intergenic: 134508  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 141706, rend_intergenic: 137585  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 146522, rend_intergenic: 142708  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 153089, rend_intergenic: 150779  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 164090, rend_intergenic: 161224  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.

-reporting highest scoring path thru the trellis.
-found 15 predictions persist after filtering for low support