-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~funannotate/test/fun/predict_misc/EVM/scaffold_17/scaffold_17_2607368-2834467

-reading genomic sequence.

** Processing features (+)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: +)
-loading gene prediction evidence. (strand: +)Valid prediction for snap_scaffold_17-snap.549-T1
Valid prediction for GlimmerHMM_glimmerT_39952-T1
Valid prediction for GlimmerHMM_glimmerT_39960-T1
Valid prediction for GlimmerHMM_glimmerT_39930-T1
Valid prediction for snap_scaffold_17-snap.567-T1
Valid prediction for snap_scaffold_17-snap.565-T1
Valid prediction for Augustus_model.g26613.t1
Valid prediction for snap_scaffold_17-snap.589-T1
Valid prediction for GlimmerHMM_glimmerT_39926-T1
Valid prediction for snap_scaffold_17-snap.568-T1
Valid prediction for GlimmerHMM_glimmerT_39933-T1
Valid prediction for CodingQuarry_transcript_21913-T1
Valid prediction for GlimmerHMM_glimmerT_39927-T1
Valid prediction for snap_scaffold_17-snap.576-T1
Valid prediction for GlimmerHMM_glimmerT_39949-T1
Valid prediction for GlimmerHMM_glimmerT_39943-T1
Valid prediction for GlimmerHMM_glimmerT_39956-T1
Valid prediction for HiQ_model.g26591.t1
Valid prediction for Augustus_model.g26605.t1
Valid prediction for GlimmerHMM_glimmerT_39948-T1
Valid prediction for snap_scaffold_17-snap.587-T1
Valid prediction for pasa_asmbl_18687.p1
Valid prediction for GlimmerHMM_glimmerT_39937-T1
Valid prediction for CodingQuarry_transcript_21909-T1
Valid prediction for snap_scaffold_17-snap.559-T1
Valid prediction for CodingQuarry_transcript_21910-T1
Valid prediction for snap_scaffold_17-snap.564-T1
Valid prediction for CodingQuarry_transcript_21908-T1
Valid prediction for pasa_asmbl_18669.p1
Valid prediction for HiQ_model.g26600.t1
Valid prediction for snap_scaffold_17-snap.591-T1
Valid prediction for Augustus_model.g26595.t1
Valid prediction for CodingQuarry_transcript_21907-T1
Valid prediction for GlimmerHMM_glimmerT_39950-T1
Valid prediction for snap_scaffold_17-snap.588-T1
Valid prediction for snap_scaffold_17-snap.555-T1
Valid prediction for snap_scaffold_17-snap.577-T1
Valid prediction for HiQ_model.g26589.t1
Valid prediction for pasa_asmbl_18694.p1
Valid prediction for snap_scaffold_17-snap.561-T1
Valid prediction for HiQ_model.g26594.t1
Valid prediction for Augustus_model.g26598.t1
Valid prediction for snap_scaffold_17-snap.579-T1
Valid prediction for Augustus_model.g26606.t1
Valid prediction for snap_scaffold_17-snap.560-T1
Valid prediction for snap_scaffold_17-snap.595-T1
Valid prediction for HiQ_model.g26597.t1
Valid prediction for snap_scaffold_17-snap.575-T1
Valid prediction for snap_scaffold_17-snap.562-T1
Valid prediction for CodingQuarry_transcript_21911-T1
Valid prediction for GlimmerHMM_glimmerT_39947-T1
Valid prediction for GlimmerHMM_glimmerT_39938-T1
Valid prediction for snap_scaffold_17-snap.553-T1
Valid prediction for GlimmerHMM_glimmerT_39941-T1
Valid prediction for CodingQuarry_transcript_21902-T1
Valid prediction for GlimmerHMM_glimmerT_39939-T1
Valid prediction for GlimmerHMM_glimmerT_39958-T1
Valid prediction for GlimmerHMM_glimmerT_39940-T1
Valid prediction for pasa_asmbl_18677.p2
Valid prediction for CodingQuarry_transcript_21906-T1
Valid prediction for GlimmerHMM_glimmerT_39936-T1
Valid prediction for CodingQuarry_transcript_21904-T1
Valid prediction for GlimmerHMM_glimmerT_39945-T1
Valid prediction for CodingQuarry_transcript_21903-T1
Valid prediction for CodingQuarry_transcript_21912-T1
Valid prediction for GlimmerHMM_glimmerT_39932-T1
Couldn't classify 86684, 87145
Sorry, prediction pasa_asmbl_18686.p1 fails validation.
(AGC)	 CC	86684-87145	GG	AGG
Valid prediction for Augustus_model.g26599.t1
Valid prediction for pasa_asmbl_18680.p1
Valid prediction for Augustus_model.g26604.t1
Valid prediction for snap_scaffold_17-snap.556-T1
Valid prediction for HiQ_model.g26593.t1

-loading the search evidence (protein and EST search results, strand: +)
-scoring exons (strand: +)

** Processing features (-)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: -)
-loading gene prediction evidence. (strand: -)Valid prediction for pasa_asmbl_17785.p1
Valid prediction for GlimmerHMM_glimmerT_39959-T1
Valid prediction for CodingQuarry_transcript_21917-T1
Valid prediction for HiQ_model.g26601.t1
Valid prediction for CodingQuarry_transcript_21914-T1
Valid prediction for Augustus_model.g26596.t1
Valid prediction for pasa_asmbl_17780.p1
Valid prediction for snap_scaffold_17-snap.585-T1
Valid prediction for snap_scaffold_17-snap.580-T1
Valid prediction for snap_scaffold_17-snap.557-T1
Valid prediction for snap_scaffold_17-snap.582-T1
Valid prediction for Augustus_model.g26588.t1
Valid prediction for GlimmerHMM_glimmerT_39934-T1
Valid prediction for GlimmerHMM_glimmerT_39931-T1
Valid prediction for snap_scaffold_17-snap.583-T1
Valid prediction for snap_scaffold_17-snap.593-T1
Valid prediction for GlimmerHMM_glimmerT_39954-T1
Valid prediction for snap_scaffold_17-snap.558-T1
Valid prediction for snap_scaffold_17-snap.578-T1
Valid prediction for CodingQuarry_transcript_21905-T1
Valid prediction for pasa_asmbl_17776.p1
Valid prediction for GlimmerHMM_glimmerT_39957-T1
Valid prediction for CodingQuarry_transcript_21901-T1
Valid prediction for Augustus_model.g26602.t1
Valid prediction for snap_scaffold_17-snap.569-T1
Valid prediction for CodingQuarry_transcript_21915-T1
Valid prediction for snap_scaffold_17-snap.584-T1
Valid prediction for pasa_asmbl_17771.p1
Valid prediction for GlimmerHMM_glimmerT_39953-T1
Valid prediction for pasa_asmbl_17782.p1
Valid prediction for snap_scaffold_17-snap.554-T1
Valid prediction for GlimmerHMM_glimmerT_39961-T1
Valid prediction for GlimmerHMM_glimmerT_39928-T1
Valid prediction for GlimmerHMM_glimmerT_39951-T1
Valid prediction for snap_scaffold_17-snap.574-T1
Valid prediction for Augustus_model.g26592.t1
Valid prediction for GlimmerHMM_glimmerT_39955-T1
Valid prediction for HiQ_model.g26603.t1
Valid prediction for snap_scaffold_17-snap.590-T1
Valid prediction for snap_scaffold_17-snap.572-T1
Valid prediction for snap_scaffold_17-snap.571-T1
Valid prediction for HiQ_model.g26590.t1
Valid prediction for GlimmerHMM_glimmerT_39935-T1
Valid prediction for snap_scaffold_17-snap.566-T1
Valid prediction for GlimmerHMM_glimmerT_39944-T1
Valid prediction for CodingQuarry_transcript_21916-T1
Valid prediction for snap_scaffold_17-snap.592-T1
Valid prediction for snap_scaffold_17-snap.552-T1
Valid prediction for snap_scaffold_17-snap.594-T1
Valid prediction for pasa_asmbl_17770.p1
Valid prediction for snap_scaffold_17-snap.550-T1
Valid prediction for snap_scaffold_17-snap.586-T1
Valid prediction for Augustus_model.g26612.t1
Valid prediction for snap_scaffold_17-snap.570-T1
Valid prediction for Augustus_model.g26611.t1
Valid prediction for Augustus_model.g26614.t1
Valid prediction for HiQ_model.g26609.t1
Valid prediction for snap_scaffold_17-snap.573-T1
Valid prediction for GlimmerHMM_glimmerT_39946-T1
Valid prediction for snap_scaffold_17-snap.563-T1
Valid prediction for Augustus_model.g26607.t1
Valid prediction for snap_scaffold_17-snap.581-T1
Valid prediction for GlimmerHMM_glimmerT_39929-T1
Valid prediction for GlimmerHMM_glimmerT_39942-T1
Valid prediction for CodingQuarry_transcript_21918-T1
Valid prediction for HiQ_model.g26608.t1
Couldn't classify 62572, 63105
Sorry, prediction pasa_asmbl_17788.p1 fails validation.
(CGC)	 TC	62572-63105	CC	GTC
Valid prediction for HiQ_model.g26610.t1
Valid prediction for snap_scaffold_17-snap.551-T1
Valid prediction for pasa_asmbl_17783.p1

-loading the search evidence (protein and EST search results, strand: -)
-scoring exons (strand: -)Error with prediction: snap lend_intergenic: 182267, rend_intergenic: 179240  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 202068, rend_intergenic: 192034  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 202621, rend_intergenic: 202423  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 204885, rend_intergenic: 202994  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 215529, rend_intergenic: 213003  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.

-building DP trellis

-building trellis in range 1 - 227100
-exon list size: 395


building trellis

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96.0    
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97.5    
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99.7    
-found 36 predictions from path traversal
Error with prediction: snap lend_intergenic: 182267, rend_intergenic: 179240  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 202068, rend_intergenic: 192034  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 202621, rend_intergenic: 202423  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 204885, rend_intergenic: 202994  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 215529, rend_intergenic: 213003  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
GOT 5prime partial gene.

-reporting highest scoring path thru the trellis.
-found 31 predictions persist after filtering for low support

-building DP trellis

-building trellis in range 216377 - 227100
-exon list size: 1


building trellis

33.3    
66.7    
-found 1 predictions from path traversal

-reporting highest scoring path thru the trellis.
-found 0 predictions persist after filtering for low support