-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~funannotate/test/fun/predict_misc/EVM/scaffold_17/scaffold_17_2084140-2271763

-reading genomic sequence.

** Processing features (+)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: +)
-loading gene prediction evidence. (strand: +)Valid prediction for GlimmerHMM_glimmerT_39857-T1
Valid prediction for snap_scaffold_17-snap.435-T1
Valid prediction for snap_scaffold_17-snap.438-T1
Valid prediction for GlimmerHMM_glimmerT_39859-T1
Valid prediction for snap_scaffold_17-snap.453-T1
Valid prediction for snap_scaffold_17-snap.469-T1
Valid prediction for snap_scaffold_17-snap.467-T1
Valid prediction for snap_scaffold_17-snap.442-T1
Valid prediction for snap_scaffold_17-snap.463-T1
Valid prediction for snap_scaffold_17-snap.441-T1
Valid prediction for GlimmerHMM_glimmerT_39863-T1
Valid prediction for snap_scaffold_17-snap.448-T1
Valid prediction for GlimmerHMM_glimmerT_39864-T1
Valid prediction for snap_scaffold_17-snap.460-T1
Valid prediction for Augustus_model.g26538.t1
Valid prediction for GlimmerHMM_glimmerT_39841-T1
Valid prediction for snap_scaffold_17-snap.464-T1
Valid prediction for GlimmerHMM_glimmerT_39846-T1
Valid prediction for snap_scaffold_17-snap.475-T1
Valid prediction for snap_scaffold_17-snap.470-T1
Valid prediction for GlimmerHMM_glimmerT_39843-T1
Valid prediction for GlimmerHMM_glimmerT_39839-T1
Valid prediction for GlimmerHMM_glimmerT_39860-T1
Valid prediction for snap_scaffold_17-snap.474-T1
Valid prediction for GlimmerHMM_glimmerT_39848-T1
Valid prediction for GlimmerHMM_glimmerT_39850-T1
Valid prediction for snap_scaffold_17-snap.456-T1
Valid prediction for Augustus_model.g26543.t1
Valid prediction for snap_scaffold_17-snap.444-T1
Valid prediction for snap_scaffold_17-snap.455-T1
Valid prediction for snap_scaffold_17-snap.459-T1
Valid prediction for snap_scaffold_17-snap.445-T1
Valid prediction for Augustus_model.g26542.t1
Valid prediction for GlimmerHMM_glimmerT_39844-T1
Valid prediction for GlimmerHMM_glimmerT_39855-T1
Valid prediction for snap_scaffold_17-snap.447-T1
Valid prediction for GlimmerHMM_glimmerT_39853-T1

-loading the search evidence (protein and EST search results, strand: +)
-scoring exons (strand: +)

** Processing features (-)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: -)
-loading gene prediction evidence. (strand: -)Valid prediction for GlimmerHMM_glimmerT_39845-T1
Valid prediction for GlimmerHMM_glimmerT_39840-T1
Valid prediction for GlimmerHMM_glimmerT_39842-T1
Valid prediction for snap_scaffold_17-snap.468-T1
Valid prediction for GlimmerHMM_glimmerT_39852-T1
Valid prediction for snap_scaffold_17-snap.458-T1
Valid prediction for snap_scaffold_17-snap.449-T1
Valid prediction for snap_scaffold_17-snap.454-T1
Valid prediction for GlimmerHMM_glimmerT_39856-T1
Valid prediction for snap_scaffold_17-snap.473-T1
Valid prediction for GlimmerHMM_glimmerT_39858-T1
Valid prediction for snap_scaffold_17-snap.462-T1
Valid prediction for GlimmerHMM_glimmerT_39847-T1
Valid prediction for snap_scaffold_17-snap.450-T1
Sorry, intron length (9) is less than minimum required (10)
Valid prediction for snap_scaffold_17-snap.439-T1
Valid prediction for snap_scaffold_17-snap.436-T1
Valid prediction for snap_scaffold_17-snap.440-T1
Valid prediction for GlimmerHMM_glimmerT_39861-T1
Valid prediction for snap_scaffold_17-snap.472-T1
Valid prediction for snap_scaffold_17-snap.457-T1
Valid prediction for snap_scaffold_17-snap.471-T1
Valid prediction for snap_scaffold_17-snap.452-T1
Valid prediction for snap_scaffold_17-snap.443-T1
Valid prediction for GlimmerHMM_glimmerT_39862-T1
Valid prediction for Augustus_model.g26541.t1
Valid prediction for GlimmerHMM_glimmerT_39854-T1
Valid prediction for Augustus_model.g26539.t1
Valid prediction for snap_scaffold_17-snap.461-T1
Valid prediction for Augustus_model.g26537.t1
Valid prediction for snap_scaffold_17-snap.446-T1
Valid prediction for GlimmerHMM_glimmerT_39849-T1
Sorry, intron length (9) is less than minimum required (10)
Valid prediction for Augustus_model.g26540.t1
Valid prediction for snap_scaffold_17-snap.451-T1
Valid prediction for snap_scaffold_17-snap.465-T1
Valid prediction for snap_scaffold_17-snap.466-T1
Valid prediction for GlimmerHMM_glimmerT_39851-T1
Valid prediction for snap_scaffold_17-snap.437-T1

-loading the search evidence (protein and EST search results, strand: -)
-scoring exons (strand: -)Error with prediction: snap lend_intergenic: 11637, rend_intergenic: 5886  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 17044, rend_intergenic: 14421  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 27189, rend_intergenic: 18873  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 32179, rend_intergenic: 27263  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 36978, rend_intergenic: 32817  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 45328, rend_intergenic: 38648  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 60537, rend_intergenic: 49873  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 75860, rend_intergenic: 72924  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 77263, rend_intergenic: 77159  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 82814, rend_intergenic: 77399  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 98858, rend_intergenic: 90152  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 102785, rend_intergenic: 100928  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 109715, rend_intergenic: 103816  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 125466, rend_intergenic: 112354  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 153711, rend_intergenic: 145598  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 183253, rend_intergenic: 178889  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.

-building DP trellis

-building trellis in range 1 - 187624
-exon list size: 258


building trellis

0.4    
0.8    
1.2    
1.5    
1.9    
2.3    
2.7    
3.1    
3.5    
3.8    
4.2    
4.6    
5.0    
5.4    
5.8    
6.2    
6.5    
6.9    
7.3    
7.7    
8.1    
8.5    
8.8    
9.2    
9.6    
10.0    
10.4    
10.8    
11.2    
11.5    
11.9    
12.3    
12.7    
13.1    
13.5    
13.8    
14.2    
14.6    
15.0    
15.4    
15.8    
16.2    
16.5    
16.9    
17.3    
17.7    
18.1    
18.5    
18.8    
19.2    
19.6    
20.0    
20.4    
20.8    
21.2    
21.5    
21.9    
22.3    
22.7    
23.1    
23.5    
23.8    
24.2    
24.6    
25.0    
25.4    
25.8    
26.2    
26.5    
26.9    
27.3    
27.7    
28.1    
28.5    
28.8    
29.2    
29.6    
30.0    
30.4    
30.8    
31.2    
31.5    
31.9    
32.3    
32.7    
33.1    
33.5    
33.8    
34.2    
34.6    
35.0    
35.4    
35.8    
36.2    
36.5    
36.9    
37.3    
37.7    
38.1    
38.5    
38.8    
39.2    
39.6    
40.0    
40.4    
40.8    
41.2    
41.5    
41.9    
42.3    
42.7    
43.1    
43.5    
43.8    
44.2    
44.6    
45.0    
45.4    
45.8    
46.2    
46.5    
46.9    
47.3    
47.7    
48.1    
48.5    
48.8    
49.2    
49.6    
50.0    
50.4    
50.8    
51.2    
51.5    
51.9    
52.3    
52.7    
53.1    
53.5    
53.8    
54.2    
54.6    
55.0    
55.4    
55.8    
56.2    
56.5    
56.9    
57.3    
57.7    
58.1    
58.5    
58.8    
59.2    
59.6    
60.0    
60.4    
60.8    
61.2    
61.5    
61.9    
62.3    
62.7    
63.1    
63.5    
63.8    
64.2    
64.6    
65.0    
65.4    
65.8    
66.2    
66.5    
66.9    
67.3    
67.7    
68.1    
68.5    
68.8    
69.2    
69.6    
70.0    
70.4    
70.8    
71.2    
71.5    
71.9    
72.3    
72.7    
73.1    
73.5    
73.8    
74.2    
74.6    
75.0    
75.4    
75.8    
76.2    
76.5    
76.9    
77.3    
77.7    
78.1    
78.5    
78.8    
79.2    
79.6    
80.0    
80.4    
80.8    
81.2    
81.5    
81.9    
82.3    
82.7    
83.1    
83.5    
83.8    
84.2    
84.6    
85.0    
85.4    
85.8    
86.2    
86.5    
86.9    
87.3    
87.7    
88.1    
88.5    
88.8    
89.2    
89.6    
90.0    
90.4    
90.8    
91.2    
91.5    
91.9    
92.3    
92.7    
93.1    
93.5    
93.8    
94.2    
94.6    
95.0    
95.4    
95.8    
96.2    
96.5    
96.9    
97.3    
97.7    
98.1    
98.5    
98.8    
99.2    
99.6    
-found 28 predictions from path traversal
Error with prediction: snap lend_intergenic: 11637, rend_intergenic: 5886  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 17044, rend_intergenic: 14421  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 27189, rend_intergenic: 18873  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 32179, rend_intergenic: 27263  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 36978, rend_intergenic: 32817  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 45328, rend_intergenic: 38648  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 60537, rend_intergenic: 49873  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 75860, rend_intergenic: 72924  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 77263, rend_intergenic: 77159  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 82814, rend_intergenic: 77399  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 98858, rend_intergenic: 90152  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 102785, rend_intergenic: 100928  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 109715, rend_intergenic: 103816  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 125466, rend_intergenic: 112354  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 153711, rend_intergenic: 145598  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 183253, rend_intergenic: 178889  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.

-reporting highest scoring path thru the trellis.
-found 13 predictions persist after filtering for low support