-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~funannotate/test/fun/predict_misc/EVM/scaffold_17/scaffold_17_14421598-14635712

-reading genomic sequence.

** Processing features (+)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: +)
-loading gene prediction evidence. (strand: +)Valid prediction for snap_scaffold_17-snap.3014-T1
Valid prediction for snap_scaffold_17-snap.3035-T1
Valid prediction for GlimmerHMM_glimmerT_41502-T1
Valid prediction for snap_scaffold_17-snap.3002-T1
Valid prediction for GlimmerHMM_glimmerT_41505-T1
Valid prediction for GlimmerHMM_glimmerT_41518-T1
Valid prediction for CodingQuarry_transcript_22267-T1
Valid prediction for snap_scaffold_17-snap.3021-T1
Valid prediction for snap_scaffold_17-snap.3015-T1
Valid prediction for Augustus_model.g27655.t1
Valid prediction for snap_scaffold_17-snap.3028-T1
Valid prediction for snap_scaffold_17-snap.3043-T1
Valid prediction for snap_scaffold_17-snap.3038-T1
Valid prediction for snap_scaffold_17-snap.3001-T1
Valid prediction for snap_scaffold_17-snap.3000-T1
Valid prediction for snap_scaffold_17-snap.3030-T1
Valid prediction for snap_scaffold_17-snap.3004-T1
Valid prediction for GlimmerHMM_glimmerT_41520-T1
Valid prediction for snap_scaffold_17-snap.3032-T1
Valid prediction for GlimmerHMM_glimmerT_41531-T1
Valid prediction for snap_scaffold_17-snap.3024-T1
Valid prediction for snap_scaffold_17-snap.3013-T1
Valid prediction for snap_scaffold_17-snap.3019-T1
Valid prediction for GlimmerHMM_glimmerT_41511-T1
Valid prediction for GlimmerHMM_glimmerT_41527-T1
Valid prediction for CodingQuarry_transcript_22269-T1
Valid prediction for snap_scaffold_17-snap.3008-T1
Valid prediction for snap_scaffold_17-snap.3041-T1
Valid prediction for GlimmerHMM_glimmerT_41522-T1
Valid prediction for snap_scaffold_17-snap.3020-T1
Couldn't classify 119337, 119870
Sorry, prediction pasa_asmbl_19412.p1 fails validation.
(CAG)	 CT	119337-119870	GT	TCG
Valid prediction for GlimmerHMM_glimmerT_41514-T1
Valid prediction for snap_scaffold_17-snap.3026-T1
Valid prediction for snap_scaffold_17-snap.2997-T1
Valid prediction for GlimmerHMM_glimmerT_41509-T1
Valid prediction for Augustus_model.g27658.t1
Valid prediction for snap_scaffold_17-snap.3006-T1
Valid prediction for pasa_asmbl_19417.p1
Valid prediction for snap_scaffold_17-snap.3044-T1
Valid prediction for GlimmerHMM_glimmerT_41524-T1
Valid prediction for snap_scaffold_17-snap.3037-T1
Valid prediction for GlimmerHMM_glimmerT_41517-T1
Couldn't classify 117969, 118610
Sorry, prediction pasa_asmbl_19411.p1 fails validation.
(ACA)	 CA	117969-118610	CA	AGC
Valid prediction for HiQ_model.g27653.t1
Couldn't classify 120384, 120560
Sorry, prediction pasa_asmbl_19413.p1 fails validation.
(TCC)	 CC	120384-120560	GT	AGG
(GCC)	 AG	120672-120808	GT	GGG
(GTT)	 AG	120910-121085	GT	AGG
(GAA)	 AG	121751-121843	GT	AGG
(TAG)	 AG	122566-123059	GT	AGG
(GTT)	 AG	123485-124813	AA	GAA
-recovered pasa_asmbl_19413.p1, terminal, 123485, 124813
-recovered pasa_asmbl_19413.p1, internal, 120672, 120808
-recovered pasa_asmbl_19413.p1, internal, 120910, 121085
-recovered pasa_asmbl_19413.p1, internal, 121751, 121843
-recovered pasa_asmbl_19413.p1, internal, 122566, 123059
Valid prediction for snap_scaffold_17-snap.3040-T1
Valid prediction for Augustus_model.g27657.t1
Valid prediction for GlimmerHMM_glimmerT_41506-T1
Valid prediction for snap_scaffold_17-snap.3042-T1
Valid prediction for GlimmerHMM_glimmerT_41508-T1
Valid prediction for Augustus_model.g27659.t1
Valid prediction for GlimmerHMM_glimmerT_41512-T1
Valid prediction for snap_scaffold_17-snap.2999-T1
Valid prediction for snap_scaffold_17-snap.2995-T1
Valid prediction for snap_scaffold_17-snap.3010-T1

-loading the search evidence (protein and EST search results, strand: +)
-scoring exons (strand: +)

** Processing features (-)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: -)
-loading gene prediction evidence. (strand: -)Valid prediction for snap_scaffold_17-snap.3018-T1
Couldn't classify 10459, 11463
Sorry, prediction pasa_asmbl_18434.p1 fails validation.
(CAT)	 GG	10459-11463	TT	AAT
Valid prediction for GlimmerHMM_glimmerT_41507-T1
Valid prediction for GlimmerHMM_glimmerT_41528-T1
Couldn't classify 201070, 201579
Sorry, prediction pasa_asmbl_18431.p1 fails validation.
(CTG)	 CG	201070-201579	GT	AGG
(GGG)	 AG	202059-202148	GT	AGG
(ATC)	 AG	203060-203623	CC	GAC
-recovered pasa_asmbl_18431.p1, terminal, 203060, 203623
-recovered pasa_asmbl_18431.p1, internal, 202059, 202148
Valid prediction for GlimmerHMM_glimmerT_41526-T1
Valid prediction for Augustus_model.g27656.t1
Valid prediction for snap_scaffold_17-snap.3031-T1
Valid prediction for GlimmerHMM_glimmerT_41523-T1
Valid prediction for snap_scaffold_17-snap.2998-T1
Valid prediction for snap_scaffold_17-snap.3017-T1
Valid prediction for GlimmerHMM_glimmerT_41530-T1
Valid prediction for Augustus_model.g27654.t1
Valid prediction for GlimmerHMM_glimmerT_41521-T1
Valid prediction for snap_scaffold_17-snap.3027-T1
Valid prediction for snap_scaffold_17-snap.3005-T1
Valid prediction for snap_scaffold_17-snap.3023-T1
Valid prediction for snap_scaffold_17-snap.3034-T1
Valid prediction for snap_scaffold_17-snap.3045-T1
Valid prediction for snap_scaffold_17-snap.3036-T1
Valid prediction for snap_scaffold_17-snap.3039-T1
Valid prediction for snap_scaffold_17-snap.3007-T1
Valid prediction for GlimmerHMM_glimmerT_41529-T1
Valid prediction for GlimmerHMM_glimmerT_41519-T1
Valid prediction for GlimmerHMM_glimmerT_41516-T1
Valid prediction for GlimmerHMM_glimmerT_41510-T1
Valid prediction for GlimmerHMM_glimmerT_41515-T1
Valid prediction for GlimmerHMM_glimmerT_41503-T1
Valid prediction for snap_scaffold_17-snap.3022-T1
Valid prediction for snap_scaffold_17-snap.2996-T1
Valid prediction for snap_scaffold_17-snap.3012-T1
Valid prediction for snap_scaffold_17-snap.3029-T1
Valid prediction for snap_scaffold_17-snap.3016-T1
Couldn't classify 199090, 199188
Couldn't classify 200419, 200580
Sorry, prediction pasa_asmbl_18432.p2 fails validation.
(GTG)	 AG	199090-199188	GT	GGG
(GTG)	 AG	199897-200004	GT	TGG
(GTG)	 AG	200419-200580	CT	ACC
-recovered pasa_asmbl_18432.p2, internal, 199090, 199188
-recovered pasa_asmbl_18432.p2, internal, 199897, 200004
Valid prediction for snap_scaffold_17-snap.3011-T1
Valid prediction for GlimmerHMM_glimmerT_41504-T1
Valid prediction for snap_scaffold_17-snap.3033-T1
Valid prediction for snap_scaffold_17-snap.3009-T1
Valid prediction for snap_scaffold_17-snap.3025-T1
Couldn't classify 10201, 10299
Sorry, prediction pasa_asmbl_18435.p2 fails validation.
(ATG)	 CC	9645-9822	GT	AGG
(TGG)	 AG	10008-10096	GT	AGG
(GTG)	 AG	10201-10299	AA	AGA
-recovered pasa_asmbl_18435.p2, initial, 9645, 9822
-recovered pasa_asmbl_18435.p2, internal, 10008, 10096
Valid prediction for GlimmerHMM_glimmerT_41513-T1
Valid prediction for snap_scaffold_17-snap.3003-T1
Valid prediction for GlimmerHMM_glimmerT_41525-T1

-loading the search evidence (protein and EST search results, strand: -)
-scoring exons (strand: -)Error with prediction: snap lend_intergenic: 13667, rend_intergenic: 10493  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 39867, rend_intergenic: 13974  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 46997, rend_intergenic: 42859  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 55381, rend_intergenic: 53204  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 62159, rend_intergenic: 57298  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 70064, rend_intergenic: 66487  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 76893, rend_intergenic: 71649  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 86207, rend_intergenic: 80213  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 100005, rend_intergenic: 91572  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 110566, rend_intergenic: 101150  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 138711, rend_intergenic: 131183  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 141620, rend_intergenic: 140213  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 145748, rend_intergenic: 143386  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 150203, rend_intergenic: 147893  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 158456, rend_intergenic: 152573  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 170796, rend_intergenic: 161706  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 173544, rend_intergenic: 171057  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 176725, rend_intergenic: 173818  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 183053, rend_intergenic: 177412  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 183951, rend_intergenic: 183129  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 201830, rend_intergenic: 184043  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 213411, rend_intergenic: 207906  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.

-building DP trellis

-building trellis in range 1 - 214115
-exon list size: 390


building trellis

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17.6    
17.9    
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18.4    
18.6    
18.9    
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25.3    
25.5    
25.8    
26.0    
26.3    
26.5    
26.8    
27.0    
27.3    
27.6    
27.8    
28.1    
28.3    
28.6    
28.8    
29.1    
29.3    
29.6    
29.8    
30.1    
30.4    
30.6    
30.9    
31.1    
31.4    
31.6    
31.9    
32.1    
32.4    
32.7    
32.9    
33.2    
33.4    
33.7    
33.9    
34.2    
34.4    
34.7    
34.9    
35.2    
35.5    
35.7    
36.0    
36.2    
36.5    
36.7    
37.0    
37.2    
37.5    
37.8    
38.0    
38.3    
38.5    
38.8    
39.0    
39.3    
39.5    
39.8    
40.1    
40.3    
40.6    
40.8    
41.1    
41.3    
41.6    
41.8    
42.1    
42.3    
42.6    
42.9    
43.1    
43.4    
43.6    
43.9    
44.1    
44.4    
44.6    
44.9    
45.2    
45.4    
45.7    
45.9    
46.2    
46.4    
46.7    
46.9    
47.2    
47.4    
47.7    
48.0    
48.2    
48.5    
48.7    
49.0    
49.2    
49.5    
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50.0    
50.3    
50.5    
50.8    
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51.3    
51.5    
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52.3    
52.6    
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55.6    
55.9    
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56.4    
56.6    
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57.1    
57.4    
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57.9    
58.2    
58.4    
58.7    
58.9    
59.2    
59.4    
59.7    
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60.5    
60.7    
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73.0    
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75.3    
75.5    
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76.0    
76.3    
76.5    
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77.0    
77.3    
77.6    
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78.1    
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78.6    
78.8    
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79.3    
79.6    
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80.4    
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81.1    
81.4    
81.6    
81.9    
82.1    
82.4    
82.7    
82.9    
83.2    
83.4    
83.7    
83.9    
84.2    
84.4    
84.7    
84.9    
85.2    
85.5    
85.7    
86.0    
86.2    
86.5    
86.7    
87.0    
87.2    
87.5    
87.8    
88.0    
88.3    
88.5    
88.8    
89.0    
89.3    
89.5    
89.8    
90.1    
90.3    
90.6    
90.8    
91.1    
91.3    
91.6    
91.8    
92.1    
92.3    
92.6    
92.9    
93.1    
93.4    
93.6    
93.9    
94.1    
94.4    
94.6    
94.9    
95.2    
95.4    
95.7    
95.9    
96.2    
96.4    
96.7    
96.9    
97.2    
97.4    
97.7    
98.0    
98.2    
98.5    
98.7    
99.0    
99.2    
99.5    
99.7    
-found 39 predictions from path traversal
Error with prediction: snap lend_intergenic: 13667, rend_intergenic: 10493  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 39867, rend_intergenic: 13974  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 46997, rend_intergenic: 42859  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 55381, rend_intergenic: 53204  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 62159, rend_intergenic: 57298  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 70064, rend_intergenic: 66487  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 76893, rend_intergenic: 71649  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 86207, rend_intergenic: 80213  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 100005, rend_intergenic: 91572  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 110566, rend_intergenic: 101150  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 138711, rend_intergenic: 131183  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 141620, rend_intergenic: 140213  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 145748, rend_intergenic: 143386  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 150203, rend_intergenic: 147893  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 158456, rend_intergenic: 152573  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 170796, rend_intergenic: 161706  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 173544, rend_intergenic: 171057  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 176725, rend_intergenic: 173818  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 183053, rend_intergenic: 177412  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 183951, rend_intergenic: 183129  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 201830, rend_intergenic: 184043  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 213411, rend_intergenic: 207906  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.

-reporting highest scoring path thru the trellis.
-found 18 predictions persist after filtering for low support