-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~funannotate/test/fun/predict_misc/EVM/scaffold_17/scaffold_17_14289050-14424002

-reading genomic sequence.

** Processing features (+)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: +)
-loading gene prediction evidence. (strand: +)Valid prediction for GlimmerHMM_glimmerT_41476-T1
Valid prediction for snap_scaffold_17-snap.2968-T1
Sorry, intron length (8) is less than minimum required (10)
Valid prediction for HiQ_model.g27643.t1
Valid prediction for snap_scaffold_17-snap.2972-T1
Valid prediction for GlimmerHMM_glimmerT_41496-T1
Valid prediction for pasa_asmbl_19409.p2
Valid prediction for GlimmerHMM_glimmerT_41480-T1
Valid prediction for snap_scaffold_17-snap.2976-T1
Valid prediction for Augustus_model.g27638.t1
Valid prediction for GlimmerHMM_glimmerT_41478-T1
Couldn't classify 106670, 106769
Sorry, prediction pasa_asmbl_19408.p1 fails validation.
(ATG)	 CC	106083-106333	GT	AAG
(GAA)	 AG	106670-106769	CA	AGC
-recovered pasa_asmbl_19408.p1, initial, 106083, 106333
Valid prediction for Augustus_model.g27652.t1
Valid prediction for snap_scaffold_17-snap.2977-T1
Valid prediction for GlimmerHMM_glimmerT_41482-T1
Valid prediction for GlimmerHMM_glimmerT_41479-T1
Valid prediction for GlimmerHMM_glimmerT_41493-T1
Valid prediction for snap_scaffold_17-snap.2961-T1
Valid prediction for snap_scaffold_17-snap.2965-T1
Valid prediction for snap_scaffold_17-snap.2992-T1
Couldn't classify 49818, 49982
Sorry, prediction pasa_asmbl_19395.p1 fails validation.
(AGC)	 GG	49818-49982	GT	GGG
(GAG)	 AG	51120-51294	GT	AGG
(GCT)	 AG	52560-52729	GT	AGG
(ACA)	 AG	53732-53918	GT	AGG
(GCT)	 AG	54417-54568	GC	GAG
-recovered pasa_asmbl_19395.p1, terminal, 54417, 54568
-recovered pasa_asmbl_19395.p1, internal, 51120, 51294
-recovered pasa_asmbl_19395.p1, internal, 52560, 52729
-recovered pasa_asmbl_19395.p1, internal, 53732, 53918
-recovered pasa_asmbl_19395.p1, internal, 54417, 54568
Valid prediction for HiQ_model.g27642.t1
Valid prediction for snap_scaffold_17-snap.2982-T1
Valid prediction for GlimmerHMM_glimmerT_41490-T1
Valid prediction for GlimmerHMM_glimmerT_41484-T1
Valid prediction for GlimmerHMM_glimmerT_41481-T1
Valid prediction for Augustus_model.g27645.t1
Valid prediction for GlimmerHMM_glimmerT_41491-T1
Valid prediction for GlimmerHMM_glimmerT_41486-T1
Valid prediction for GlimmerHMM_glimmerT_41485-T1
Valid prediction for snap_scaffold_17-snap.2991-T1
Couldn't classify 85796, 85904
Sorry, prediction pasa_asmbl_19401.p1 fails validation.
(GAG)	 AG	85796-85904	GT	AAG
(GCC)	 AG	87415-87522	GT	AAG
(CCC)	 AG	89930-90049	GT	CAG
(CCT)	 AG	90561-90709	GT	CGG
(CTG)	 AG	91025-91149	GT	AGG
(TAC)	 AG	91399-91496	GC	AGG
(GCA)	 AG	91518-91682	GT	AAG
(GCT)	 AG	91970-92462	GT	AGG
(GGC)	 AG	92687-92867	GT	AGG
(AGA)	 AG	93123-93227	GT	AGG
(CGC)	 AG	93466-93516	GT	AGG
(AAG)	 AG	93608-93674	GT	AGG
(GAA)	 AG	93776-94057	GT	AGG
(AGG)	 AG	94533-94543	GT	AAG
-recovered pasa_asmbl_19401.p1, terminal, 94533, 94543
-recovered pasa_asmbl_19401.p1, internal, 85796, 85904
-recovered pasa_asmbl_19401.p1, internal, 87415, 87522
-recovered pasa_asmbl_19401.p1, internal, 89930, 90049
-recovered pasa_asmbl_19401.p1, internal, 90561, 90709
-recovered pasa_asmbl_19401.p1, internal, 91025, 91149
-recovered pasa_asmbl_19401.p1, internal, 91399, 91496
-recovered pasa_asmbl_19401.p1, internal, 91518, 91682
-recovered pasa_asmbl_19401.p1, internal, 91970, 92462
-recovered pasa_asmbl_19401.p1, internal, 92687, 92867
-recovered pasa_asmbl_19401.p1, internal, 93123, 93227
-recovered pasa_asmbl_19401.p1, internal, 93466, 93516
-recovered pasa_asmbl_19401.p1, internal, 93608, 93674
-recovered pasa_asmbl_19401.p1, internal, 93776, 94057
-recovered pasa_asmbl_19401.p1, internal, 94533, 94543
Valid prediction for Augustus_model.g27648.t1
Valid prediction for GlimmerHMM_glimmerT_41500-T1
Valid prediction for snap_scaffold_17-snap.2989-T1
Valid prediction for snap_scaffold_17-snap.2964-T1
Valid prediction for snap_scaffold_17-snap.2980-T1
Valid prediction for snap_scaffold_17-snap.2978-T1
Valid prediction for Augustus_model.g27636.t1
Valid prediction for GlimmerHMM_glimmerT_41495-T1
Valid prediction for pasa_asmbl_19392.p1
Valid prediction for snap_scaffold_17-snap.2984-T1
Valid prediction for GlimmerHMM_glimmerT_41489-T1
Valid prediction for GlimmerHMM_glimmerT_41488-T1
Valid prediction for snap_scaffold_17-snap.2971-T1
Sorry, intron length (9) is less than minimum required (10)
Valid prediction for snap_scaffold_17-snap.2985-T1
Valid prediction for GlimmerHMM_glimmerT_41497-T1
Valid prediction for Augustus_model.g27637.t1
Valid prediction for GlimmerHMM_glimmerT_41501-T1
Valid prediction for CodingQuarry_transcript_22263-T1
Valid prediction for snap_scaffold_17-snap.2967-T1
Couldn't classify 26510, 26518
Sorry, prediction pasa_asmbl_19389.p1 fails validation.
(GGG)	 TG	26510-26518	GT	GGG
(ATG)	 AG	26881-26950	GT	AGG
(ATG)	 AG	27230-27450	TG	GAT
-recovered pasa_asmbl_19389.p1, initial, 26881, 26950
-recovered pasa_asmbl_19389.p1, terminal, 27230, 27450
-recovered pasa_asmbl_19389.p1, internal, 26881, 26950
Valid prediction for Augustus_model.g27640.t1
Valid prediction for snap_scaffold_17-snap.2969-T1
Couldn't classify 102936, 103018
Couldn't classify 106670, 106769
Sorry, prediction pasa_asmbl_19405.p1 fails validation.
(GCC)	 CA	102936-103018	GT	AAG
(GTT)	 AG	103499-104074	GT	AGG
(TTT)	 AG	104186-104352	GT	AGG
(CTC)	 AG	104517-104628	GT	AGG
(GAG)	 AG	105266-105341	GT	AGG
(GAG)	 AG	106158-106333	GT	AAG
(GAA)	 AG	106670-106769	CA	AGC
-recovered pasa_asmbl_19405.p1, internal, 103499, 104074
-recovered pasa_asmbl_19405.p1, internal, 104186, 104352
-recovered pasa_asmbl_19405.p1, internal, 104517, 104628
-recovered pasa_asmbl_19405.p1, internal, 105266, 105341
-recovered pasa_asmbl_19405.p1, internal, 106158, 106333
Valid prediction for GlimmerHMM_glimmerT_41492-T1
Valid prediction for CodingQuarry_transcript_22261-T1
Valid prediction for snap_scaffold_17-snap.2962-T1
Valid prediction for Augustus_model.g27647.t1
Valid prediction for Augustus_model.g27639.t1
Couldn't classify 25736, 25908
Couldn't classify 26417, 26470
Sorry, prediction pasa_asmbl_19493.p1 fails validation.
(CTG)	 GG	25736-25908	GT	CAG
(GAA)	 AG	26120-26279	GT	GGG
(CTG)	 AG	26417-26470	CT	AGC
-recovered pasa_asmbl_19493.p1, internal, 26120, 26279
Valid prediction for Augustus_model.g27646.t1

-loading the search evidence (protein and EST search results, strand: +)
-scoring exons (strand: +)

** Processing features (-)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: -)
-loading gene prediction evidence. (strand: -)Valid prediction for snap_scaffold_17-snap.2960-T1
Valid prediction for CodingQuarry_transcript_22264-T1
Valid prediction for GlimmerHMM_glimmerT_41499-T1
Valid prediction for pasa_asmbl_18429.p1
Valid prediction for snap_scaffold_17-snap.2981-T1
Valid prediction for pasa_asmbl_18420.p1
Valid prediction for pasa_asmbl_18422.p1
Valid prediction for snap_scaffold_17-snap.2986-T1
Valid prediction for snap_scaffold_17-snap.2987-T1
Valid prediction for CodingQuarry_transcript_22265-T1
Valid prediction for Augustus_model.g27651.t1
Valid prediction for HiQ_model.g27635.t1
Valid prediction for snap_scaffold_17-snap.2979-T1
Valid prediction for snap_scaffold_17-snap.2975-T1
Valid prediction for GlimmerHMM_glimmerT_41477-T1
Valid prediction for snap_scaffold_17-snap.2973-T1
Valid prediction for snap_scaffold_17-snap.2974-T1
Valid prediction for snap_scaffold_17-snap.2966-T1
Valid prediction for HiQ_model.g27649.t1
Valid prediction for snap_scaffold_17-snap.2988-T1
Couldn't classify 71167, 71262
Sorry, prediction pasa_asmbl_18425.p1 fails validation.
(TTC)	 CA	71167-71262	GT	CTG
(GAA)	 AG	71893-72008	GT	AAG
(GAA)	 AG	72098-72185	GT	CGG
(GCT)	 AG	72297-72342	GT	GCG
(GAG)	 AG	72636-72822	GT	AGG
(GTT)	 AG	74556-74589	GT	CGG
(GAC)	 AG	74750-74764	TG	AAT
-recovered pasa_asmbl_18425.p1, terminal, 74750, 74764
-recovered pasa_asmbl_18425.p1, internal, 71893, 72008
-recovered pasa_asmbl_18425.p1, internal, 72098, 72185
-recovered pasa_asmbl_18425.p1, internal, 72297, 72342
-recovered pasa_asmbl_18425.p1, internal, 72636, 72822
-recovered pasa_asmbl_18425.p1, internal, 74556, 74589
Valid prediction for snap_scaffold_17-snap.2959-T1
Valid prediction for CodingQuarry_transcript_22260-T1
Valid prediction for snap_scaffold_17-snap.2970-T1
Valid prediction for HiQ_model.g27644.t1
Valid prediction for snap_scaffold_17-snap.2983-T1
Valid prediction for GlimmerHMM_glimmerT_41494-T1
Valid prediction for HiQ_model.g27641.t1
Valid prediction for snap_scaffold_17-snap.2990-T1
Valid prediction for snap_scaffold_17-snap.2994-T1
Sorry, intron length (3) is less than minimum required (10)
Valid prediction for Augustus_model.g27650.t1
Valid prediction for snap_scaffold_17-snap.2963-T1
Sorry, intron length (8) is less than minimum required (10)
Valid prediction for GlimmerHMM_glimmerT_41498-T1
Valid prediction for GlimmerHMM_glimmerT_41475-T1
Valid prediction for GlimmerHMM_glimmerT_41487-T1
Valid prediction for CodingQuarry_transcript_22259-T1
Valid prediction for snap_scaffold_17-snap.2993-T1
Valid prediction for GlimmerHMM_glimmerT_41483-T1

-loading the search evidence (protein and EST search results, strand: -)
-scoring exons (strand: -)Error with prediction: snap lend_intergenic: 8158, rend_intergenic: 6368  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 17104, rend_intergenic: 11986  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 27450, rend_intergenic: 22369  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 54568, rend_intergenic: 48480  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 81853, rend_intergenic: 81585  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 83770, rend_intergenic: 81865  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 85017, rend_intergenic: 84615  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 87559, rend_intergenic: 85429  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 94580, rend_intergenic: 89225  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 107852, rend_intergenic: 103514  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 115890, rend_intergenic: 112658  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 132654, rend_intergenic: 126374  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.

-building DP trellis

-building trellis in range 1 - 134953
-exon list size: 372


building trellis

0.3    
0.5    
0.8    
1.1    
1.3    
1.6    
1.9    
2.1    
2.4    
2.7    
2.9    
3.2    
3.5    
3.7    
4.0    
4.3    
4.5    
4.8    
5.1    
5.3    
5.6    
5.9    
6.1    
6.4    
6.7    
7.0    
7.2    
7.5    
7.8    
8.0    
8.3    
8.6    
8.8    
9.1    
9.4    
9.6    
9.9    
10.2    
10.4    
10.7    
11.0    
11.2    
11.5    
11.8    
12.0    
12.3    
12.6    
12.8    
13.1    
13.4    
13.6    
13.9    
14.2    
14.4    
14.7    
15.0    
15.2    
15.5    
15.8    
16.0    
16.3    
16.6    
16.8    
17.1    
17.4    
17.6    
17.9    
18.2    
18.4    
18.7    
19.0    
19.3    
19.5    
19.8    
20.1    
20.3    
20.6    
20.9    
21.1    
21.4    
21.7    
21.9    
22.2    
22.5    
22.7    
23.0    
23.3    
23.5    
23.8    
24.1    
24.3    
24.6    
24.9    
25.1    
25.4    
25.7    
25.9    
26.2    
26.5    
26.7    
27.0    
27.3    
27.5    
27.8    
28.1    
28.3    
28.6    
28.9    
29.1    
29.4    
29.7    
29.9    
30.2    
30.5    
30.7    
31.0    
31.3    
31.6    
31.8    
32.1    
32.4    
32.6    
32.9    
33.2    
33.4    
33.7    
34.0    
34.2    
34.5    
34.8    
35.0    
35.3    
35.6    
35.8    
36.1    
36.4    
36.6    
36.9    
37.2    
37.4    
37.7    
38.0    
38.2    
38.5    
38.8    
39.0    
39.3    
39.6    
39.8    
40.1    
40.4    
40.6    
40.9    
41.2    
41.4    
41.7    
42.0    
42.2    
42.5    
42.8    
43.0    
43.3    
43.6    
43.9    
44.1    
44.4    
44.7    
44.9    
45.2    
45.5    
45.7    
46.0    
46.3    
46.5    
46.8    
47.1    
47.3    
47.6    
47.9    
48.1    
48.4    
48.7    
48.9    
49.2    
49.5    
49.7    
50.0    
50.3    
50.5    
50.8    
51.1    
51.3    
51.6    
51.9    
52.1    
52.4    
52.7    
52.9    
53.2    
53.5    
53.7    
54.0    
54.3    
54.5    
54.8    
55.1    
55.3    
55.6    
55.9    
56.1    
56.4    
56.7    
57.0    
57.2    
57.5    
57.8    
58.0    
58.3    
58.6    
58.8    
59.1    
59.4    
59.6    
59.9    
60.2    
60.4    
60.7    
61.0    
61.2    
61.5    
61.8    
62.0    
62.3    
62.6    
62.8    
63.1    
63.4    
63.6    
63.9    
64.2    
64.4    
64.7    
65.0    
65.2    
65.5    
65.8    
66.0    
66.3    
66.6    
66.8    
67.1    
67.4    
67.6    
67.9    
68.2    
68.4    
68.7    
69.0    
69.3    
69.5    
69.8    
70.1    
70.3    
70.6    
70.9    
71.1    
71.4    
71.7    
71.9    
72.2    
72.5    
72.7    
73.0    
73.3    
73.5    
73.8    
74.1    
74.3    
74.6    
74.9    
75.1    
75.4    
75.7    
75.9    
76.2    
76.5    
76.7    
77.0    
77.3    
77.5    
77.8    
78.1    
78.3    
78.6    
78.9    
79.1    
79.4    
79.7    
79.9    
80.2    
80.5    
80.7    
81.0    
81.3    
81.6    
81.8    
82.1    
82.4    
82.6    
82.9    
83.2    
83.4    
83.7    
84.0    
84.2    
84.5    
84.8    
85.0    
85.3    
85.6    
85.8    
86.1    
86.4    
86.6    
86.9    
87.2    
87.4    
87.7    
88.0    
88.2    
88.5    
88.8    
89.0    
89.3    
89.6    
89.8    
90.1    
90.4    
90.6    
90.9    
91.2    
91.4    
91.7    
92.0    
92.2    
92.5    
92.8    
93.0    
93.3    
93.6    
93.9    
94.1    
94.4    
94.7    
94.9    
95.2    
95.5    
95.7    
96.0    
96.3    
96.5    
96.8    
97.1    
97.3    
97.6    
97.9    
98.1    
98.4    
98.7    
98.9    
99.2    
99.5    
99.7    
-found 28 predictions from path traversal
Error with prediction: snap lend_intergenic: 8158, rend_intergenic: 6368  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 17104, rend_intergenic: 11986  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 27450, rend_intergenic: 22369  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 54568, rend_intergenic: 48480  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 81853, rend_intergenic: 81585  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 83770, rend_intergenic: 81865  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 85017, rend_intergenic: 84615  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 87559, rend_intergenic: 85429  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 94580, rend_intergenic: 89225  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 107852, rend_intergenic: 103514  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 115890, rend_intergenic: 112658  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 132654, rend_intergenic: 126374  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.

-reporting highest scoring path thru the trellis.
-found 24 predictions persist after filtering for low support