-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~funannotate/test/fun/predict_misc/EVM/scaffold_17/scaffold_17_142750-468658

-reading genomic sequence.

** Processing features (+)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: +)
-loading gene prediction evidence. (strand: +)Valid prediction for snap_scaffold_17-snap.38-T1
Valid prediction for Augustus_model.g26368.t1
Valid prediction for GlimmerHMM_glimmerT_39599-T1
Valid prediction for snap_scaffold_17-snap.29-T1
Valid prediction for snap_scaffold_17-snap.36-T1
Valid prediction for snap_scaffold_17-snap.64-T1
Valid prediction for snap_scaffold_17-snap.34-T1
Valid prediction for GlimmerHMM_glimmerT_39609-T1
Valid prediction for Augustus_model.g26367.t1
Valid prediction for snap_scaffold_17-snap.66-T1
Valid prediction for GlimmerHMM_glimmerT_39608-T1
Valid prediction for snap_scaffold_17-snap.39-T1
Valid prediction for GlimmerHMM_glimmerT_39601-T1
Valid prediction for GlimmerHMM_glimmerT_39600-T1
Valid prediction for Augustus_model.g26370.t1
Valid prediction for GlimmerHMM_glimmerT_39594-T1
Valid prediction for GlimmerHMM_glimmerT_39590-T1
Valid prediction for GlimmerHMM_glimmerT_39605-T1
Valid prediction for Augustus_model.g26369.t1
Valid prediction for GlimmerHMM_glimmerT_39611-T1
Valid prediction for GlimmerHMM_glimmerT_39591-T1
Valid prediction for snap_scaffold_17-snap.54-T1
Valid prediction for snap_scaffold_17-snap.35-T1
Valid prediction for snap_scaffold_17-snap.60-T1
Valid prediction for snap_scaffold_17-snap.42-T1
Valid prediction for GlimmerHMM_glimmerT_39592-T1
Valid prediction for Augustus_model.g26365.t1
Valid prediction for snap_scaffold_17-snap.63-T1
Valid prediction for GlimmerHMM_glimmerT_39596-T1
Valid prediction for snap_scaffold_17-snap.55-T1
Valid prediction for snap_scaffold_17-snap.49-T1
Valid prediction for GlimmerHMM_glimmerT_39610-T1
Valid prediction for snap_scaffold_17-snap.45-T1
Valid prediction for snap_scaffold_17-snap.69-T1
Valid prediction for snap_scaffold_17-snap.58-T1
Valid prediction for Augustus_model.g26371.t1
Valid prediction for snap_scaffold_17-snap.48-T1
Valid prediction for snap_scaffold_17-snap.33-T1
Valid prediction for snap_scaffold_17-snap.68-T1
Valid prediction for GlimmerHMM_glimmerT_39589-T1
Valid prediction for snap_scaffold_17-snap.50-T1
Valid prediction for snap_scaffold_17-snap.70-T1
Valid prediction for snap_scaffold_17-snap.59-T1
Valid prediction for snap_scaffold_17-snap.56-T1
Valid prediction for Augustus_model.g26366.t1
Valid prediction for GlimmerHMM_glimmerT_39604-T1
Valid prediction for snap_scaffold_17-snap.75-T1
Valid prediction for GlimmerHMM_glimmerT_39595-T1
Valid prediction for snap_scaffold_17-snap.47-T1

-loading the search evidence (protein and EST search results, strand: +)
-scoring exons (strand: +)

** Processing features (-)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: -)
-loading gene prediction evidence. (strand: -)Valid prediction for snap_scaffold_17-snap.51-T1
Valid prediction for GlimmerHMM_glimmerT_39607-T1
Valid prediction for GlimmerHMM_glimmerT_39606-T1
Valid prediction for GlimmerHMM_glimmerT_39587-T1
Valid prediction for Augustus_model.g26374.t1
Valid prediction for GlimmerHMM_glimmerT_39598-T1
Valid prediction for snap_scaffold_17-snap.57-T1
Valid prediction for snap_scaffold_17-snap.40-T1
Valid prediction for snap_scaffold_17-snap.31-T1
Valid prediction for snap_scaffold_17-snap.65-T1
Valid prediction for Augustus_model.g26373.t1
Valid prediction for GlimmerHMM_glimmerT_39597-T1
Valid prediction for snap_scaffold_17-snap.74-T1
Valid prediction for Augustus_model.g26372.t1
Valid prediction for snap_scaffold_17-snap.46-T1
Valid prediction for snap_scaffold_17-snap.61-T1
Valid prediction for GlimmerHMM_glimmerT_39593-T1
Valid prediction for GlimmerHMM_glimmerT_39612-T1
Valid prediction for snap_scaffold_17-snap.44-T1
Valid prediction for snap_scaffold_17-snap.67-T1
Valid prediction for snap_scaffold_17-snap.52-T1
Valid prediction for snap_scaffold_17-snap.41-T1
Valid prediction for snap_scaffold_17-snap.32-T1
Valid prediction for snap_scaffold_17-snap.71-T1
Valid prediction for Augustus_model.g26375.t1
Valid prediction for GlimmerHMM_glimmerT_39603-T1
Valid prediction for snap_scaffold_17-snap.76-T1
Valid prediction for Augustus_model.g26376.t1
Valid prediction for snap_scaffold_17-snap.43-T1
Valid prediction for snap_scaffold_17-snap.77-T1
Valid prediction for snap_scaffold_17-snap.73-T1
Valid prediction for snap_scaffold_17-snap.62-T1
Valid prediction for GlimmerHMM_glimmerT_39588-T1
Valid prediction for snap_scaffold_17-snap.30-T1
Valid prediction for GlimmerHMM_glimmerT_39613-T1
Valid prediction for snap_scaffold_17-snap.53-T1
Valid prediction for snap_scaffold_17-snap.37-T1
Valid prediction for snap_scaffold_17-snap.72-T1
Valid prediction for GlimmerHMM_glimmerT_39602-T1

-loading the search evidence (protein and EST search results, strand: -)
-scoring exons (strand: -)Error with prediction: snap lend_intergenic: 43973, rend_intergenic: 38132  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 53246, rend_intergenic: 45172  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 108962, rend_intergenic: 105985  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 127570, rend_intergenic: 120397  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 128938, rend_intergenic: 128338  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 140409, rend_intergenic: 129338  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 148642, rend_intergenic: 147467  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 183140, rend_intergenic: 173100  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 272750, rend_intergenic: 266333  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 280477, rend_intergenic: 276922  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 316519, rend_intergenic: 312799  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.

-building DP trellis

-building trellis in range 1 - 325909
-exon list size: 339


building trellis

0.3    
0.6    
0.9    
1.2    
1.5    
1.8    
2.1    
2.3    
2.6    
2.9    
3.2    
3.5    
3.8    
4.1    
4.4    
4.7    
5.0    
5.3    
5.6    
5.9    
6.2    
6.5    
6.7    
7.0    
7.3    
7.6    
7.9    
8.2    
8.5    
8.8    
9.1    
9.4    
9.7    
10.0    
10.3    
10.6    
10.9    
11.1    
11.4    
11.7    
12.0    
12.3    
12.6    
12.9    
13.2    
13.5    
13.8    
14.1    
14.4    
14.7    
15.0    
15.2    
15.5    
15.8    
16.1    
16.4    
16.7    
17.0    
17.3    
17.6    
17.9    
18.2    
18.5    
18.8    
19.1    
19.4    
19.6    
19.9    
20.2    
20.5    
20.8    
21.1    
21.4    
21.7    
22.0    
22.3    
22.6    
22.9    
23.2    
23.5    
23.8    
24.0    
24.3    
24.6    
24.9    
25.2    
25.5    
25.8    
26.1    
26.4    
26.7    
27.0    
27.3    
27.6    
27.9    
28.2    
28.4    
28.7    
29.0    
29.3    
29.6    
29.9    
30.2    
30.5    
30.8    
31.1    
31.4    
31.7    
32.0    
32.3    
32.6    
32.8    
33.1    
33.4    
33.7    
34.0    
34.3    
34.6    
34.9    
35.2    
35.5    
35.8    
36.1    
36.4    
36.7    
37.0    
37.2    
37.5    
37.8    
38.1    
38.4    
38.7    
39.0    
39.3    
39.6    
39.9    
40.2    
40.5    
40.8    
41.1    
41.3    
41.6    
41.9    
42.2    
42.5    
42.8    
43.1    
43.4    
43.7    
44.0    
44.3    
44.6    
44.9    
45.2    
45.5    
45.7    
46.0    
46.3    
46.6    
46.9    
47.2    
47.5    
47.8    
48.1    
48.4    
48.7    
49.0    
49.3    
49.6    
49.9    
50.1    
50.4    
50.7    
51.0    
51.3    
51.6    
51.9    
52.2    
52.5    
52.8    
53.1    
53.4    
53.7    
54.0    
54.3    
54.5    
54.8    
55.1    
55.4    
55.7    
56.0    
56.3    
56.6    
56.9    
57.2    
57.5    
57.8    
58.1    
58.4    
58.7    
58.9    
59.2    
59.5    
59.8    
60.1    
60.4    
60.7    
61.0    
61.3    
61.6    
61.9    
62.2    
62.5    
62.8    
63.0    
63.3    
63.6    
63.9    
64.2    
64.5    
64.8    
65.1    
65.4    
65.7    
66.0    
66.3    
66.6    
66.9    
67.2    
67.4    
67.7    
68.0    
68.3    
68.6    
68.9    
69.2    
69.5    
69.8    
70.1    
70.4    
70.7    
71.0    
71.3    
71.6    
71.8    
72.1    
72.4    
72.7    
73.0    
73.3    
73.6    
73.9    
74.2    
74.5    
74.8    
75.1    
75.4    
75.7    
76.0    
76.2    
76.5    
76.8    
77.1    
77.4    
77.7    
78.0    
78.3    
78.6    
78.9    
79.2    
79.5    
79.8    
80.1    
80.4    
80.6    
80.9    
81.2    
81.5    
81.8    
82.1    
82.4    
82.7    
83.0    
83.3    
83.6    
83.9    
84.2    
84.5    
84.8    
85.0    
85.3    
85.6    
85.9    
86.2    
86.5    
86.8    
87.1    
87.4    
87.7    
88.0    
88.3    
88.6    
88.9    
89.1    
89.4    
89.7    
90.0    
90.3    
90.6    
90.9    
91.2    
91.5    
91.8    
92.1    
92.4    
92.7    
93.0    
93.3    
93.5    
93.8    
94.1    
94.4    
94.7    
95.0    
95.3    
95.6    
95.9    
96.2    
96.5    
96.8    
97.1    
97.4    
97.7    
97.9    
98.2    
98.5    
98.8    
99.1    
99.4    
99.7    
-found 23 predictions from path traversal
Error with prediction: snap lend_intergenic: 43973, rend_intergenic: 38132  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 53246, rend_intergenic: 45172  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 108962, rend_intergenic: 105985  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 127570, rend_intergenic: 120397  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 128938, rend_intergenic: 128338  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 140409, rend_intergenic: 129338  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 148642, rend_intergenic: 147467  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 183140, rend_intergenic: 173100  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 272750, rend_intergenic: 266333  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 280477, rend_intergenic: 276922  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 316519, rend_intergenic: 312799  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
GOT 5prime partial gene.

-reporting highest scoring path thru the trellis.
-found 18 predictions persist after filtering for low support

-building DP trellis

-building trellis in range 1 - 38446
-exon list size: 6


building trellis

12.5    
25.0    
37.5    
50.0    
62.5    
75.0    
87.5    
-found 1 predictions from path traversal

-reporting highest scoring path thru the trellis.
-found 0 predictions persist after filtering for low support

-building DP trellis

-building trellis in range 8268 - 38446
-exon list size: 5


building trellis

14.3    
28.6    
42.9    
57.1    
71.4    
85.7    
-found 1 predictions from path traversal

-reporting highest scoring path thru the trellis.
-found 0 predictions persist after filtering for low support

-building DP trellis

-building trellis in range 8268 - 30351
-exon list size: 1


building trellis

33.3    
66.7    
-found 1 predictions from path traversal
GOT 5prime partial gene.

-reporting highest scoring path thru the trellis.
-found 0 predictions persist after filtering for low support
	-no exons in range 8678 - 30351