-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~funannotate/test/fun/predict_misc/EVM/scaffold_17/scaffold_17_13739478-13881683

-reading genomic sequence.

** Processing features (+)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: +)
-loading gene prediction evidence. (strand: +)Valid prediction for snap_scaffold_17-snap.2843-T1
Valid prediction for pasa_asmbl_19356.p1
Valid prediction for snap_scaffold_17-snap.2828-T1
Valid prediction for HiQ_model.g27585.t1
Valid prediction for snap_scaffold_17-snap.2864-T1
Valid prediction for Augustus_model.g27592.t1
Couldn't classify 100594, 101049
Sorry, prediction pasa_asmbl_19354.p1 fails validation.
(AGC)	 CA	100594-101049	GT	AGG
(GCC)	 AG	101483-101875	GT	AGG
(GTG)	 AG	102247-102482	GT	AGG
(TCC)	 AG	103428-104097	TG	GAT
-recovered pasa_asmbl_19354.p1, terminal, 103428, 104097
-recovered pasa_asmbl_19354.p1, internal, 101483, 101875
-recovered pasa_asmbl_19354.p1, internal, 102247, 102482
Couldn't classify 67265, 67425
Couldn't classify 67802, 67993
Sorry, prediction pasa_asmbl_19476.p1 fails validation.
(GCG)	 CA	67265-67425	GT	AGG
(GCC)	 AG	67602-67692	GT	CTG
(GTG)	 AG	67802-67993	CA	ACC
-recovered pasa_asmbl_19476.p1, internal, 67602, 67692
Valid prediction for Augustus_model.g27599.t1
Valid prediction for GlimmerHMM_glimmerT_41408-T1
Valid prediction for GlimmerHMM_glimmerT_41405-T1
Valid prediction for snap_scaffold_17-snap.2847-T1
Valid prediction for snap_scaffold_17-snap.2857-T1
Valid prediction for snap_scaffold_17-snap.2845-T1
Valid prediction for snap_scaffold_17-snap.2853-T1
Valid prediction for Augustus_model.g27597.t1
Valid prediction for HiQ_model.g27593.t1
Valid prediction for snap_scaffold_17-snap.2859-T1
Valid prediction for GlimmerHMM_glimmerT_41397-T1
Valid prediction for snap_scaffold_17-snap.2834-T1
Valid prediction for pasa_asmbl_19352.p1
Valid prediction for GlimmerHMM_glimmerT_41414-T1
Valid prediction for snap_scaffold_17-snap.2851-T1
Valid prediction for Augustus_model.g27587.t1
Valid prediction for GlimmerHMM_glimmerT_41396-T1
Valid prediction for snap_scaffold_17-snap.2837-T1
Valid prediction for GlimmerHMM_glimmerT_41415-T1
Valid prediction for GlimmerHMM_glimmerT_41416-T1
Valid prediction for GlimmerHMM_glimmerT_41404-T1
Valid prediction for GlimmerHMM_glimmerT_41394-T1
Valid prediction for GlimmerHMM_glimmerT_41393-T1
Valid prediction for HiQ_model.g27590.t1
Valid prediction for GlimmerHMM_glimmerT_41390-T1
Valid prediction for Augustus_model.g27588.t1
Valid prediction for snap_scaffold_17-snap.2849-T1
Valid prediction for GlimmerHMM_glimmerT_41411-T1
Valid prediction for CodingQuarry_transcript_22241-T1
Valid prediction for snap_scaffold_17-snap.2832-T1
Valid prediction for GlimmerHMM_glimmerT_41401-T1
Valid prediction for snap_scaffold_17-snap.2827-T1
Valid prediction for snap_scaffold_17-snap.2863-T1
Valid prediction for snap_scaffold_17-snap.2842-T1
Valid prediction for GlimmerHMM_glimmerT_41410-T1
Valid prediction for Augustus_model.g27598.t1
Valid prediction for snap_scaffold_17-snap.2861-T1
Valid prediction for snap_scaffold_17-snap.2831-T1
Valid prediction for GlimmerHMM_glimmerT_41399-T1

-loading the search evidence (protein and EST search results, strand: +)
-scoring exons (strand: +)

** Processing features (-)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: -)
-loading gene prediction evidence. (strand: -)Valid prediction for snap_scaffold_17-snap.2850-T1
Valid prediction for CodingQuarry_transcript_22242-T1
Valid prediction for GlimmerHMM_glimmerT_41413-T1
Valid prediction for snap_scaffold_17-snap.2836-T1
Valid prediction for GlimmerHMM_glimmerT_41395-T1
Valid prediction for CodingQuarry_transcript_22243-T1
Valid prediction for snap_scaffold_17-snap.2835-T1
Valid prediction for GlimmerHMM_glimmerT_41403-T1
Valid prediction for Augustus_model.g27584.t1
Valid prediction for snap_scaffold_17-snap.2840-T1
Valid prediction for CodingQuarry_transcript_22240-T1
Valid prediction for snap_scaffold_17-snap.2856-T1
Valid prediction for GlimmerHMM_glimmerT_41392-T1
Valid prediction for snap_scaffold_17-snap.2833-T1
Valid prediction for HiQ_model.g27596.t1
Valid prediction for snap_scaffold_17-snap.2854-T1
Valid prediction for GlimmerHMM_glimmerT_41400-T1
Valid prediction for snap_scaffold_17-snap.2846-T1
Valid prediction for GlimmerHMM_glimmerT_41409-T1
Valid prediction for snap_scaffold_17-snap.2838-T1
Valid prediction for snap_scaffold_17-snap.2855-T1
Valid prediction for HiQ_model.g27589.t1
Valid prediction for snap_scaffold_17-snap.2829-T1
Valid prediction for pasa_asmbl_18383.p1
Valid prediction for snap_scaffold_17-snap.2830-T1
Valid prediction for snap_scaffold_17-snap.2844-T1
Valid prediction for HiQ_model.g27595.t1
Valid prediction for pasa_asmbl_18379.p1
Valid prediction for Augustus_model.g27591.t1
Valid prediction for GlimmerHMM_glimmerT_41398-T1
Valid prediction for snap_scaffold_17-snap.2860-T1
Valid prediction for Augustus_model.g27586.t1
Valid prediction for snap_scaffold_17-snap.2862-T1
Couldn't classify 56773, 56964
Sorry, prediction pasa_asmbl_18378.p1 fails validation.
(TGT)	 GT	56773-56964	GT	CAG
(GAA)	 AG	57180-57306	GT	AGG
(ATA)	 AG	57503-57579	AA	GAA
-recovered pasa_asmbl_18378.p1, terminal, 57503, 57579
-recovered pasa_asmbl_18378.p1, internal, 57180, 57306
Valid prediction for GlimmerHMM_glimmerT_41402-T1
Valid prediction for snap_scaffold_17-snap.2848-T1
Valid prediction for snap_scaffold_17-snap.2858-T1
Valid prediction for HiQ_model.g27594.t1
Valid prediction for GlimmerHMM_glimmerT_41389-T1
Valid prediction for snap_scaffold_17-snap.2825-T1
Valid prediction for snap_scaffold_17-snap.2841-T1
Valid prediction for snap_scaffold_17-snap.2826-T1
Valid prediction for GlimmerHMM_glimmerT_41391-T1
Couldn't classify 36097, 36130
Sorry, prediction pasa_asmbl_18381.p1 fails validation.
(TCT)	 GT	36097-36130	GT	AGG
(CTG)	 AG	36839-36907	GT	TGG
(GTT)	 AG	37085-37251	GT	AGG
(GAT)	 AG	37338-37415	GC	GAG
-recovered pasa_asmbl_18381.p1, terminal, 37338, 37415
-recovered pasa_asmbl_18381.p1, internal, 36839, 36907
-recovered pasa_asmbl_18381.p1, internal, 37085, 37251
-recovered pasa_asmbl_18381.p1, internal, 37338, 37415
Valid prediction for GlimmerHMM_glimmerT_41406-T1
Valid prediction for GlimmerHMM_glimmerT_41407-T1
Valid prediction for snap_scaffold_17-snap.2865-T1
Valid prediction for snap_scaffold_17-snap.2839-T1
Valid prediction for snap_scaffold_17-snap.2852-T1
Valid prediction for GlimmerHMM_glimmerT_41412-T1

-loading the search evidence (protein and EST search results, strand: -)
-scoring exons (strand: -)Error with prediction: snap lend_intergenic: 7578, rend_intergenic: 4305  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 9121, rend_intergenic: 7958  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 12200, rend_intergenic: 10432  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 27401, rend_intergenic: 23368  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 31531, rend_intergenic: 27760  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 70951, rend_intergenic: 66407  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 92273, rend_intergenic: 88002  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 97278, rend_intergenic: 95803  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 99526, rend_intergenic: 97892  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 104097, rend_intergenic: 102295  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 117887, rend_intergenic: 112821  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 125798, rend_intergenic: 123972  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 126332, rend_intergenic: 126236  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 134213, rend_intergenic: 129692  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 140870, rend_intergenic: 136971  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.

-building DP trellis

-building trellis in range 1 - 142206
-exon list size: 310


building trellis

0.3    
0.6    
1.0    
1.3    
1.6    
1.9    
2.2    
2.6    
2.9    
3.2    
3.5    
3.8    
4.2    
4.5    
4.8    
5.1    
5.4    
5.8    
6.1    
6.4    
6.7    
7.1    
7.4    
7.7    
8.0    
8.3    
8.7    
9.0    
9.3    
9.6    
9.9    
10.3    
10.6    
10.9    
11.2    
11.5    
11.9    
12.2    
12.5    
12.8    
13.1    
13.5    
13.8    
14.1    
14.4    
14.7    
15.1    
15.4    
15.7    
16.0    
16.3    
16.7    
17.0    
17.3    
17.6    
17.9    
18.3    
18.6    
18.9    
19.2    
19.6    
19.9    
20.2    
20.5    
20.8    
21.2    
21.5    
21.8    
22.1    
22.4    
22.8    
23.1    
23.4    
23.7    
24.0    
24.4    
24.7    
25.0    
25.3    
25.6    
26.0    
26.3    
26.6    
26.9    
27.2    
27.6    
27.9    
28.2    
28.5    
28.8    
29.2    
29.5    
29.8    
30.1    
30.4    
30.8    
31.1    
31.4    
31.7    
32.1    
32.4    
32.7    
33.0    
33.3    
33.7    
34.0    
34.3    
34.6    
34.9    
35.3    
35.6    
35.9    
36.2    
36.5    
36.9    
37.2    
37.5    
37.8    
38.1    
38.5    
38.8    
39.1    
39.4    
39.7    
40.1    
40.4    
40.7    
41.0    
41.3    
41.7    
42.0    
42.3    
42.6    
42.9    
43.3    
43.6    
43.9    
44.2    
44.6    
44.9    
45.2    
45.5    
45.8    
46.2    
46.5    
46.8    
47.1    
47.4    
47.8    
48.1    
48.4    
48.7    
49.0    
49.4    
49.7    
50.0    
50.3    
50.6    
51.0    
51.3    
51.6    
51.9    
52.2    
52.6    
52.9    
53.2    
53.5    
53.8    
54.2    
54.5    
54.8    
55.1    
55.4    
55.8    
56.1    
56.4    
56.7    
57.1    
57.4    
57.7    
58.0    
58.3    
58.7    
59.0    
59.3    
59.6    
59.9    
60.3    
60.6    
60.9    
61.2    
61.5    
61.9    
62.2    
62.5    
62.8    
63.1    
63.5    
63.8    
64.1    
64.4    
64.7    
65.1    
65.4    
65.7    
66.0    
66.3    
66.7    
67.0    
67.3    
67.6    
67.9    
68.3    
68.6    
68.9    
69.2    
69.6    
69.9    
70.2    
70.5    
70.8    
71.2    
71.5    
71.8    
72.1    
72.4    
72.8    
73.1    
73.4    
73.7    
74.0    
74.4    
74.7    
75.0    
75.3    
75.6    
76.0    
76.3    
76.6    
76.9    
77.2    
77.6    
77.9    
78.2    
78.5    
78.8    
79.2    
79.5    
79.8    
80.1    
80.4    
80.8    
81.1    
81.4    
81.7    
82.1    
82.4    
82.7    
83.0    
83.3    
83.7    
84.0    
84.3    
84.6    
84.9    
85.3    
85.6    
85.9    
86.2    
86.5    
86.9    
87.2    
87.5    
87.8    
88.1    
88.5    
88.8    
89.1    
89.4    
89.7    
90.1    
90.4    
90.7    
91.0    
91.3    
91.7    
92.0    
92.3    
92.6    
92.9    
93.3    
93.6    
93.9    
94.2    
94.6    
94.9    
95.2    
95.5    
95.8    
96.2    
96.5    
96.8    
97.1    
97.4    
97.8    
98.1    
98.4    
98.7    
99.0    
99.4    
99.7    
-found 28 predictions from path traversal
Error with prediction: snap lend_intergenic: 7578, rend_intergenic: 4305  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 9121, rend_intergenic: 7958  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 12200, rend_intergenic: 10432  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 27401, rend_intergenic: 23368  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 31531, rend_intergenic: 27760  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 70951, rend_intergenic: 66407  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 92273, rend_intergenic: 88002  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 97278, rend_intergenic: 95803  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 99526, rend_intergenic: 97892  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 104097, rend_intergenic: 102295  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 117887, rend_intergenic: 112821  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 125798, rend_intergenic: 123972  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 126332, rend_intergenic: 126236  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 134213, rend_intergenic: 129692  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 140870, rend_intergenic: 136971  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.

-reporting highest scoring path thru the trellis.
-found 22 predictions persist after filtering for low support