-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~funannotate/test/fun/predict_misc/EVM/scaffold_17/scaffold_17_12494810-12790990

-reading genomic sequence.

** Processing features (+)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: +)
-loading gene prediction evidence. (strand: +)Valid prediction for snap_scaffold_17-snap.2599-T1
Valid prediction for GlimmerHMM_glimmerT_41264-T1
Valid prediction for snap_scaffold_17-snap.2570-T1
Valid prediction for snap_scaffold_17-snap.2596-T1
Valid prediction for snap_scaffold_17-snap.2573-T1
Valid prediction for GlimmerHMM_glimmerT_41240-T1
Valid prediction for GlimmerHMM_glimmerT_41256-T1
Valid prediction for snap_scaffold_17-snap.2564-T1
Valid prediction for Augustus_model.g27499.t1
Valid prediction for snap_scaffold_17-snap.2554-T1
Valid prediction for snap_scaffold_17-snap.2594-T1
Valid prediction for GlimmerHMM_glimmerT_41249-T1
Valid prediction for GlimmerHMM_glimmerT_41260-T1
Valid prediction for Augustus_model.g27489.t1
Valid prediction for GlimmerHMM_glimmerT_41262-T1
Valid prediction for GlimmerHMM_glimmerT_41253-T1
Valid prediction for GlimmerHMM_glimmerT_41252-T1
Valid prediction for GlimmerHMM_glimmerT_41251-T1
Valid prediction for snap_scaffold_17-snap.2577-T1
Valid prediction for snap_scaffold_17-snap.2590-T1
Valid prediction for snap_scaffold_17-snap.2556-T1
Valid prediction for snap_scaffold_17-snap.2571-T1
Valid prediction for Augustus_model.g27496.t1
Valid prediction for GlimmerHMM_glimmerT_41259-T1
Valid prediction for Augustus_model.g27497.t1
Valid prediction for GlimmerHMM_glimmerT_41263-T1
Valid prediction for GlimmerHMM_glimmerT_41246-T1
Valid prediction for snap_scaffold_17-snap.2551-T1
Sorry, intron length (4) is less than minimum required (10)
Valid prediction for Augustus_model.g27498.t1
Valid prediction for GlimmerHMM_glimmerT_41233-T1
Valid prediction for snap_scaffold_17-snap.2560-T1
Valid prediction for GlimmerHMM_glimmerT_41261-T1
Valid prediction for GlimmerHMM_glimmerT_41257-T1
Valid prediction for snap_scaffold_17-snap.2587-T1
Valid prediction for Augustus_model.g27500.t1
Valid prediction for Augustus_model.g27494.t1
Valid prediction for snap_scaffold_17-snap.2568-T1
Valid prediction for snap_scaffold_17-snap.2591-T1
Valid prediction for snap_scaffold_17-snap.2580-T1
Valid prediction for snap_scaffold_17-snap.2583-T1
Valid prediction for snap_scaffold_17-snap.2579-T1
Valid prediction for snap_scaffold_17-snap.2585-T1
Valid prediction for Augustus_model.g27495.t1
Valid prediction for GlimmerHMM_glimmerT_41243-T1
Valid prediction for snap_scaffold_17-snap.2578-T1

-loading the search evidence (protein and EST search results, strand: +)
-scoring exons (strand: +)

** Processing features (-)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: -)
-loading gene prediction evidence. (strand: -)Valid prediction for GlimmerHMM_glimmerT_41234-T1
Valid prediction for snap_scaffold_17-snap.2575-T1
Valid prediction for snap_scaffold_17-snap.2562-T1
Valid prediction for snap_scaffold_17-snap.2574-T1
Valid prediction for GlimmerHMM_glimmerT_41236-T1
Valid prediction for GlimmerHMM_glimmerT_41231-T1
Valid prediction for Augustus_model.g27490.t1
Valid prediction for GlimmerHMM_glimmerT_41248-T1
Valid prediction for snap_scaffold_17-snap.2563-T1
Sorry, intron length (3) is less than minimum required (10)
Sorry, intron length (3) is less than minimum required (10)
Valid prediction for GlimmerHMM_glimmerT_41239-T1
Valid prediction for Augustus_model.g27491.t1
Valid prediction for snap_scaffold_17-snap.2559-T1
Valid prediction for snap_scaffold_17-snap.2565-T1
Valid prediction for Augustus_model.g27501.t1
Valid prediction for snap_scaffold_17-snap.2557-T1
Valid prediction for snap_scaffold_17-snap.2552-T1
Valid prediction for GlimmerHMM_glimmerT_41258-T1
Valid prediction for GlimmerHMM_glimmerT_41255-T1
Valid prediction for snap_scaffold_17-snap.2586-T1
Valid prediction for snap_scaffold_17-snap.2555-T1
Valid prediction for GlimmerHMM_glimmerT_41244-T1
Valid prediction for GlimmerHMM_glimmerT_41235-T1
Valid prediction for snap_scaffold_17-snap.2595-T1
Valid prediction for snap_scaffold_17-snap.2588-T1
Valid prediction for snap_scaffold_17-snap.2566-T1
Valid prediction for snap_scaffold_17-snap.2572-T1
Valid prediction for GlimmerHMM_glimmerT_41250-T1
Valid prediction for GlimmerHMM_glimmerT_41242-T1
Valid prediction for GlimmerHMM_glimmerT_41238-T1
Valid prediction for snap_scaffold_17-snap.2581-T1
Valid prediction for GlimmerHMM_glimmerT_41247-T1
Valid prediction for Augustus_model.g27492.t1
Valid prediction for snap_scaffold_17-snap.2589-T1
Valid prediction for snap_scaffold_17-snap.2598-T1
Valid prediction for snap_scaffold_17-snap.2582-T1
Valid prediction for snap_scaffold_17-snap.2569-T1
Valid prediction for snap_scaffold_17-snap.2553-T1
Valid prediction for snap_scaffold_17-snap.2561-T1
Valid prediction for GlimmerHMM_glimmerT_41241-T1
Valid prediction for snap_scaffold_17-snap.2592-T1
Valid prediction for GlimmerHMM_glimmerT_41245-T1
Valid prediction for snap_scaffold_17-snap.2584-T1
Valid prediction for snap_scaffold_17-snap.2597-T1
Valid prediction for GlimmerHMM_glimmerT_41254-T1
Valid prediction for GlimmerHMM_glimmerT_41237-T1
Valid prediction for Augustus_model.g27493.t1
Valid prediction for snap_scaffold_17-snap.2593-T1
Valid prediction for Augustus_model.g27488.t1
Valid prediction for GlimmerHMM_glimmerT_41232-T1
Valid prediction for snap_scaffold_17-snap.2576-T1
Valid prediction for snap_scaffold_17-snap.2567-T1
Valid prediction for snap_scaffold_17-snap.2558-T1

-loading the search evidence (protein and EST search results, strand: -)
-scoring exons (strand: -)Error with prediction: GlimmerHMM lend_intergenic: 16852, rend_intergenic: 16849  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 17897, rend_intergenic: 12941  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 19847, rend_intergenic: 17923  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 23679, rend_intergenic: 22440  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 48247, rend_intergenic: 24117  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 57894, rend_intergenic: 48277  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 79585, rend_intergenic: 58068  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 87337, rend_intergenic: 79877  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 92898, rend_intergenic: 90013  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 100223, rend_intergenic: 97469  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 118572, rend_intergenic: 101009  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 119056, rend_intergenic: 118602  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 138409, rend_intergenic: 119283  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 160821, rend_intergenic: 138428  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 185517, rend_intergenic: 160872  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 197922, rend_intergenic: 190844  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 205082, rend_intergenic: 198166  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 219375, rend_intergenic: 210692  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 221529, rend_intergenic: 219391  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 233750, rend_intergenic: 224564  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 249856, rend_intergenic: 234493  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 275372, rend_intergenic: 250870  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 275755, rend_intergenic: 275622  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 279065, rend_intergenic: 276837  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 284735, rend_intergenic: 279102  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 286994, rend_intergenic: 286049  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.

-building DP trellis

-building trellis in range 1 - 296181
-exon list size: 426


building trellis

0.2    
0.5    
0.7    
0.9    
1.2    
1.4    
1.6    
1.9    
2.1    
2.3    
2.6    
2.8    
3.0    
3.3    
3.5    
3.7    
4.0    
4.2    
4.4    
4.7    
4.9    
5.1    
5.4    
5.6    
5.8    
6.1    
6.3    
6.5    
6.8    
7.0    
7.2    
7.5    
7.7    
7.9    
8.2    
8.4    
8.6    
8.9    
9.1    
9.3    
9.6    
9.8    
10.0    
10.3    
10.5    
10.7    
11.0    
11.2    
11.4    
11.7    
11.9    
12.1    
12.4    
12.6    
12.9    
13.1    
13.3    
13.6    
13.8    
14.0    
14.3    
14.5    
14.7    
15.0    
15.2    
15.4    
15.7    
15.9    
16.1    
16.4    
16.6    
16.8    
17.1    
17.3    
17.5    
17.8    
18.0    
18.2    
18.5    
18.7    
18.9    
19.2    
19.4    
19.6    
19.9    
20.1    
20.3    
20.6    
20.8    
21.0    
21.3    
21.5    
21.7    
22.0    
22.2    
22.4    
22.7    
22.9    
23.1    
23.4    
23.6    
23.8    
24.1    
24.3    
24.5    
24.8    
25.0    
25.2    
25.5    
25.7    
25.9    
26.2    
26.4    
26.6    
26.9    
27.1    
27.3    
27.6    
27.8    
28.0    
28.3    
28.5    
28.7    
29.0    
29.2    
29.4    
29.7    
29.9    
30.1    
30.4    
30.6    
30.8    
31.1    
31.3    
31.5    
31.8    
32.0    
32.2    
32.5    
32.7    
32.9    
33.2    
33.4    
33.6    
33.9    
34.1    
34.3    
34.6    
34.8    
35.0    
35.3    
35.5    
35.7    
36.0    
36.2    
36.4    
36.7    
36.9    
37.1    
37.4    
37.6    
37.9    
38.1    
38.3    
38.6    
38.8    
39.0    
39.3    
39.5    
39.7    
40.0    
40.2    
40.4    
40.7    
40.9    
41.1    
41.4    
41.6    
41.8    
42.1    
42.3    
42.5    
42.8    
43.0    
43.2    
43.5    
43.7    
43.9    
44.2    
44.4    
44.6    
44.9    
45.1    
45.3    
45.6    
45.8    
46.0    
46.3    
46.5    
46.7    
47.0    
47.2    
47.4    
47.7    
47.9    
48.1    
48.4    
48.6    
48.8    
49.1    
49.3    
49.5    
49.8    
50.0    
50.2    
50.5    
50.7    
50.9    
51.2    
51.4    
51.6    
51.9    
52.1    
52.3    
52.6    
52.8    
53.0    
53.3    
53.5    
53.7    
54.0    
54.2    
54.4    
54.7    
54.9    
55.1    
55.4    
55.6    
55.8    
56.1    
56.3    
56.5    
56.8    
57.0    
57.2    
57.5    
57.7    
57.9    
58.2    
58.4    
58.6    
58.9    
59.1    
59.3    
59.6    
59.8    
60.0    
60.3    
60.5    
60.7    
61.0    
61.2    
61.4    
61.7    
61.9    
62.1    
62.4    
62.6    
62.9    
63.1    
63.3    
63.6    
63.8    
64.0    
64.3    
64.5    
64.7    
65.0    
65.2    
65.4    
65.7    
65.9    
66.1    
66.4    
66.6    
66.8    
67.1    
67.3    
67.5    
67.8    
68.0    
68.2    
68.5    
68.7    
68.9    
69.2    
69.4    
69.6    
69.9    
70.1    
70.3    
70.6    
70.8    
71.0    
71.3    
71.5    
71.7    
72.0    
72.2    
72.4    
72.7    
72.9    
73.1    
73.4    
73.6    
73.8    
74.1    
74.3    
74.5    
74.8    
75.0    
75.2    
75.5    
75.7    
75.9    
76.2    
76.4    
76.6    
76.9    
77.1    
77.3    
77.6    
77.8    
78.0    
78.3    
78.5    
78.7    
79.0    
79.2    
79.4    
79.7    
79.9    
80.1    
80.4    
80.6    
80.8    
81.1    
81.3    
81.5    
81.8    
82.0    
82.2    
82.5    
82.7    
82.9    
83.2    
83.4    
83.6    
83.9    
84.1    
84.3    
84.6    
84.8    
85.0    
85.3    
85.5    
85.7    
86.0    
86.2    
86.4    
86.7    
86.9    
87.1    
87.4    
87.6    
87.9    
88.1    
88.3    
88.6    
88.8    
89.0    
89.3    
89.5    
89.7    
90.0    
90.2    
90.4    
90.7    
90.9    
91.1    
91.4    
91.6    
91.8    
92.1    
92.3    
92.5    
92.8    
93.0    
93.2    
93.5    
93.7    
93.9    
94.2    
94.4    
94.6    
94.9    
95.1    
95.3    
95.6    
95.8    
96.0    
96.3    
96.5    
96.7    
97.0    
97.2    
97.4    
97.7    
97.9    
98.1    
98.4    
98.6    
98.8    
99.1    
99.3    
99.5    
99.8    
-found 40 predictions from path traversal
Error with prediction: GlimmerHMM lend_intergenic: 16852, rend_intergenic: 16849  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 17897, rend_intergenic: 12941  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 19847, rend_intergenic: 17923  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 23679, rend_intergenic: 22440  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 48247, rend_intergenic: 24117  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 57894, rend_intergenic: 48277  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 79585, rend_intergenic: 58068  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 87337, rend_intergenic: 79877  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 92898, rend_intergenic: 90013  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 100223, rend_intergenic: 97469  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 118572, rend_intergenic: 101009  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 119056, rend_intergenic: 118602  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 138409, rend_intergenic: 119283  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 160821, rend_intergenic: 138428  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 185517, rend_intergenic: 160872  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 197922, rend_intergenic: 190844  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 205082, rend_intergenic: 198166  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 219375, rend_intergenic: 210692  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 221529, rend_intergenic: 219391  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 233750, rend_intergenic: 224564  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 249856, rend_intergenic: 234493  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 275372, rend_intergenic: 250870  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 275755, rend_intergenic: 275622  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 279065, rend_intergenic: 276837  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 284735, rend_intergenic: 279102  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 286994, rend_intergenic: 286049  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.

-reporting highest scoring path thru the trellis.
-found 10 predictions persist after filtering for low support

-building DP trellis

-building trellis in range 1 - 12928
-exon list size: 5


building trellis

14.3    
28.6    
42.9    
57.1    
71.4    
85.7    
-found 1 predictions from path traversal

-reporting highest scoring path thru the trellis.
-found 0 predictions persist after filtering for low support

-building DP trellis

-building trellis in range 1 - 12722
-exon list size: 4


building trellis

16.7    
33.3    
50.0    
66.7    
83.3    
-found 1 predictions from path traversal
GOT 5prime partial gene.

-reporting highest scoring path thru the trellis.
-found 0 predictions persist after filtering for low support