-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~funannotate/test/fun/predict_misc/EVM/scaffold_17/scaffold_17_11743428-11960938

-reading genomic sequence.

** Processing features (+)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: +)
-loading gene prediction evidence. (strand: +)Valid prediction for GlimmerHMM_glimmerT_41139-T1
Valid prediction for snap_scaffold_17-snap.2392-T1
Valid prediction for GlimmerHMM_glimmerT_41145-T1
Valid prediction for snap_scaffold_17-snap.2381-T1
Valid prediction for GlimmerHMM_glimmerT_41147-T1
Valid prediction for snap_scaffold_17-snap.2413-T1
Valid prediction for GlimmerHMM_glimmerT_41150-T1
Valid prediction for snap_scaffold_17-snap.2417-T1
Valid prediction for GlimmerHMM_glimmerT_41131-T1
Valid prediction for snap_scaffold_17-snap.2421-T1
Valid prediction for snap_scaffold_17-snap.2416-T1
Valid prediction for snap_scaffold_17-snap.2402-T1
Valid prediction for snap_scaffold_17-snap.2384-T1
Valid prediction for snap_scaffold_17-snap.2405-T1
Valid prediction for snap_scaffold_17-snap.2383-T1
Valid prediction for GlimmerHMM_glimmerT_41143-T1
Valid prediction for snap_scaffold_17-snap.2407-T1
Sorry, intron length (9) is less than minimum required (10)
Valid prediction for GlimmerHMM_glimmerT_41152-T1
Valid prediction for snap_scaffold_17-snap.2388-T1
Valid prediction for snap_scaffold_17-snap.2404-T1
Valid prediction for snap_scaffold_17-snap.2393-T1
Valid prediction for GlimmerHMM_glimmerT_41136-T1
Valid prediction for snap_scaffold_17-snap.2398-T1
Valid prediction for snap_scaffold_17-snap.2403-T1
Valid prediction for GlimmerHMM_glimmerT_41144-T1
Valid prediction for GlimmerHMM_glimmerT_41148-T1
Valid prediction for snap_scaffold_17-snap.2412-T1
Valid prediction for GlimmerHMM_glimmerT_41133-T1
Valid prediction for snap_scaffold_17-snap.2420-T1
Valid prediction for snap_scaffold_17-snap.2418-T1
Valid prediction for GlimmerHMM_glimmerT_41137-T1
Valid prediction for GlimmerHMM_glimmerT_41130-T1
Valid prediction for snap_scaffold_17-snap.2390-T1
Valid prediction for snap_scaffold_17-snap.2400-T1
Valid prediction for snap_scaffold_17-snap.2387-T1
Valid prediction for GlimmerHMM_glimmerT_41132-T1
Valid prediction for snap_scaffold_17-snap.2411-T1
Valid prediction for snap_scaffold_17-snap.2397-T1
Valid prediction for snap_scaffold_17-snap.2396-T1
Valid prediction for Augustus_model.g27436.t1
Valid prediction for snap_scaffold_17-snap.2380-T1
Valid prediction for GlimmerHMM_glimmerT_41141-T1
Valid prediction for snap_scaffold_17-snap.2395-T1
Valid prediction for snap_scaffold_17-snap.2415-T1

-loading the search evidence (protein and EST search results, strand: +)
-scoring exons (strand: +)

** Processing features (-)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: -)
-loading gene prediction evidence. (strand: -)Valid prediction for snap_scaffold_17-snap.2422-T1
Valid prediction for snap_scaffold_17-snap.2386-T1
Valid prediction for snap_scaffold_17-snap.2401-T1
Valid prediction for GlimmerHMM_glimmerT_41146-T1
Valid prediction for GlimmerHMM_glimmerT_41151-T1
Valid prediction for GlimmerHMM_glimmerT_41128-T1
Valid prediction for CodingQuarry_transcript_22188-T1
Valid prediction for snap_scaffold_17-snap.2389-T1
Valid prediction for snap_scaffold_17-snap.2406-T1
Valid prediction for Augustus_model.g27435.t1
Valid prediction for snap_scaffold_17-snap.2385-T1
Valid prediction for GlimmerHMM_glimmerT_41153-T1
Valid prediction for GlimmerHMM_glimmerT_41149-T1
Valid prediction for pasa_asmbl_18305.p1
Valid prediction for GlimmerHMM_glimmerT_41142-T1
Valid prediction for snap_scaffold_17-snap.2409-T1
Valid prediction for snap_scaffold_17-snap.2410-T1
Valid prediction for snap_scaffold_17-snap.2419-T1
Valid prediction for GlimmerHMM_glimmerT_41129-T1
Valid prediction for snap_scaffold_17-snap.2399-T1
Valid prediction for GlimmerHMM_glimmerT_41135-T1
Valid prediction for snap_scaffold_17-snap.2408-T1
Valid prediction for GlimmerHMM_glimmerT_41134-T1
Valid prediction for HiQ_model.g27438.t1
Valid prediction for snap_scaffold_17-snap.2414-T1
Valid prediction for snap_scaffold_17-snap.2391-T1
Valid prediction for snap_scaffold_17-snap.2382-T1
Valid prediction for Augustus_model.g27437.t1
Valid prediction for GlimmerHMM_glimmerT_41140-T1
Valid prediction for GlimmerHMM_glimmerT_41138-T1
Valid prediction for snap_scaffold_17-snap.2394-T1

-loading the search evidence (protein and EST search results, strand: -)
-scoring exons (strand: -)Error with prediction: snap lend_intergenic: 18702, rend_intergenic: 16566  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 46333, rend_intergenic: 40314  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 57285, rend_intergenic: 55212  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 82650, rend_intergenic: 75808  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 100638, rend_intergenic: 94610  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 127074, rend_intergenic: 125983  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 127439, rend_intergenic: 127168  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 130009, rend_intergenic: 127854  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 146271, rend_intergenic: 144426  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 154710, rend_intergenic: 148589  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 180952, rend_intergenic: 175287  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 185645, rend_intergenic: 185502  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 190067, rend_intergenic: 186152  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 195598, rend_intergenic: 193821  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 211340, rend_intergenic: 209077  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.

-building DP trellis

-building trellis in range 1 - 217511
-exon list size: 216


building trellis

0.5    
0.9    
1.4    
1.8    
2.3    
2.8    
3.2    
3.7    
4.1    
4.6    
5.0    
5.5    
6.0    
6.4    
6.9    
7.3    
7.8    
8.3    
8.7    
9.2    
9.6    
10.1    
10.6    
11.0    
11.5    
11.9    
12.4    
12.8    
13.3    
13.8    
14.2    
14.7    
15.1    
15.6    
16.1    
16.5    
17.0    
17.4    
17.9    
18.3    
18.8    
19.3    
19.7    
20.2    
20.6    
21.1    
21.6    
22.0    
22.5    
22.9    
23.4    
23.9    
24.3    
24.8    
25.2    
25.7    
26.1    
26.6    
27.1    
27.5    
28.0    
28.4    
28.9    
29.4    
29.8    
30.3    
30.7    
31.2    
31.7    
32.1    
32.6    
33.0    
33.5    
33.9    
34.4    
34.9    
35.3    
35.8    
36.2    
36.7    
37.2    
37.6    
38.1    
38.5    
39.0    
39.4    
39.9    
40.4    
40.8    
41.3    
41.7    
42.2    
42.7    
43.1    
43.6    
44.0    
44.5    
45.0    
45.4    
45.9    
46.3    
46.8    
47.2    
47.7    
48.2    
48.6    
49.1    
49.5    
50.0    
50.5    
50.9    
51.4    
51.8    
52.3    
52.8    
53.2    
53.7    
54.1    
54.6    
55.0    
55.5    
56.0    
56.4    
56.9    
57.3    
57.8    
58.3    
58.7    
59.2    
59.6    
60.1    
60.6    
61.0    
61.5    
61.9    
62.4    
62.8    
63.3    
63.8    
64.2    
64.7    
65.1    
65.6    
66.1    
66.5    
67.0    
67.4    
67.9    
68.3    
68.8    
69.3    
69.7    
70.2    
70.6    
71.1    
71.6    
72.0    
72.5    
72.9    
73.4    
73.9    
74.3    
74.8    
75.2    
75.7    
76.1    
76.6    
77.1    
77.5    
78.0    
78.4    
78.9    
79.4    
79.8    
80.3    
80.7    
81.2    
81.7    
82.1    
82.6    
83.0    
83.5    
83.9    
84.4    
84.9    
85.3    
85.8    
86.2    
86.7    
87.2    
87.6    
88.1    
88.5    
89.0    
89.4    
89.9    
90.4    
90.8    
91.3    
91.7    
92.2    
92.7    
93.1    
93.6    
94.0    
94.5    
95.0    
95.4    
95.9    
96.3    
96.8    
97.2    
97.7    
98.2    
98.6    
99.1    
99.5    
-found 23 predictions from path traversal
Error with prediction: snap lend_intergenic: 18702, rend_intergenic: 16566  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 46333, rend_intergenic: 40314  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 57285, rend_intergenic: 55212  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 82650, rend_intergenic: 75808  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 100638, rend_intergenic: 94610  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 127074, rend_intergenic: 125983  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 127439, rend_intergenic: 127168  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 130009, rend_intergenic: 127854  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 146271, rend_intergenic: 144426  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 154710, rend_intergenic: 148589  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 180952, rend_intergenic: 175287  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 185645, rend_intergenic: 185502  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 190067, rend_intergenic: 186152  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 195598, rend_intergenic: 193821  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 211340, rend_intergenic: 209077  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
GOT 5prime partial gene.

-reporting highest scoring path thru the trellis.
-found 12 predictions persist after filtering for low support