-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~funannotate/test/fun/predict_misc/EVM/scaffold_17/scaffold_17_11001326-11358614

-reading genomic sequence.

** Processing features (+)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: +)
-loading gene prediction evidence. (strand: +)Valid prediction for GlimmerHMM_glimmerT_41057-T1
Valid prediction for snap_scaffold_17-snap.2273-T1
Valid prediction for snap_scaffold_17-snap.2266-T1
Valid prediction for snap_scaffold_17-snap.2234-T1
Valid prediction for snap_scaffold_17-snap.2221-T1
Valid prediction for snap_scaffold_17-snap.2285-T1
Valid prediction for Augustus_model.g27384.t1
Valid prediction for HiQ_model.g27399.t1
Valid prediction for snap_scaffold_17-snap.2225-T1
Valid prediction for GlimmerHMM_glimmerT_41049-T1
Valid prediction for snap_scaffold_17-snap.2262-T1
Valid prediction for snap_scaffold_17-snap.2229-T1
Valid prediction for GlimmerHMM_glimmerT_41071-T1
Valid prediction for Augustus_model.g27386.t1
Valid prediction for GlimmerHMM_glimmerT_41043-T1
Valid prediction for Augustus_model.g27392.t1
Valid prediction for snap_scaffold_17-snap.2258-T1
Valid prediction for Augustus_model.g27387.t1
Valid prediction for GlimmerHMM_glimmerT_41033-T1
Valid prediction for snap_scaffold_17-snap.2259-T1
Valid prediction for snap_scaffold_17-snap.2219-T1
Valid prediction for snap_scaffold_17-snap.2239-T1
Couldn't classify 29013, 29145
Sorry, prediction pasa_asmbl_19198.p1 fails validation.
(GAT)	 AG	29013-29145	GT	AGG
(AAT)	 AG	29246-29419	GT	TGG
(ACC)	 AG	29675-29790	GT	ACG
(ACC)	 AG	30036-30196	GT	ATG
(CTG)	 AG	30307-30433	GT	AGG
(ACT)	 AG	30567-30644	GT	AGG
(GTC)	 AG	30825-30901	GT	AGG
(TAA)	 AG	31052-31109	GT	TGG
(TTC)	 AG	31198-31308	GT	TGG
(GCT)	 AG	31430-31492	AG	AGA
-recovered pasa_asmbl_19198.p1, terminal, 31430, 31492
-recovered pasa_asmbl_19198.p1, internal, 29013, 29145
-recovered pasa_asmbl_19198.p1, internal, 29246, 29419
-recovered pasa_asmbl_19198.p1, internal, 29675, 29790
-recovered pasa_asmbl_19198.p1, internal, 30036, 30196
-recovered pasa_asmbl_19198.p1, internal, 30307, 30433
-recovered pasa_asmbl_19198.p1, internal, 30567, 30644
-recovered pasa_asmbl_19198.p1, internal, 30825, 30901
-recovered pasa_asmbl_19198.p1, internal, 31052, 31109
-recovered pasa_asmbl_19198.p1, internal, 31198, 31308
Valid prediction for GlimmerHMM_glimmerT_41035-T1
Valid prediction for snap_scaffold_17-snap.2264-T1
Valid prediction for snap_scaffold_17-snap.2217-T1
Valid prediction for snap_scaffold_17-snap.2238-T1
Couldn't classify 354009, 354045
Sorry, prediction pasa_asmbl_19221.p1 fails validation.
(ATG)	 AT	347220-347313	GT	AGG
(AAA)	 AG	349002-349123	GT	AGG
(TTC)	 AG	350484-350600	GT	AGG
(GAG)	 AG	351108-351254	GT	CTG
(GAC)	 AG	353335-353471	GT	AGG
(GGG)	 AG	354009-354045	GG	GCG
-recovered pasa_asmbl_19221.p1, initial, 347220, 347313
-recovered pasa_asmbl_19221.p1, internal, 349002, 349123
-recovered pasa_asmbl_19221.p1, internal, 350484, 350600
-recovered pasa_asmbl_19221.p1, internal, 351108, 351254
-recovered pasa_asmbl_19221.p1, internal, 353335, 353471
Couldn't classify 74143, 74299
Sorry, prediction pasa_asmbl_19203.p1 fails validation.
(GGT)	 CA	74143-74299	GT	AGG
(AGC)	 AG	74892-74935	GT	CCG
(TCC)	 AG	75024-75174	GT	AGG
(GCT)	 AG	75916-76023	GT	AGG
(CTT)	 AG	76121-76278	GT	AGG
(GCG)	 AG	76382-76570	GT	ATG
(GGT)	 AG	76789-80509	GT	GTG
(GTA)	 AG	80996-81021	TC	GAT
add_exon() Sorry, pasa_asmbl_19203.p1 75916-76023-terminal-1 is invalid.
-recovered pasa_asmbl_19203.p1, terminal, 75916, 76023
-recovered pasa_asmbl_19203.p1, terminal, 80996, 81021
-recovered pasa_asmbl_19203.p1, internal, 74892, 74935
-recovered pasa_asmbl_19203.p1, internal, 75024, 75174
-recovered pasa_asmbl_19203.p1, internal, 75916, 76023
-recovered pasa_asmbl_19203.p1, internal, 76121, 76278
-recovered pasa_asmbl_19203.p1, internal, 76382, 76570
-recovered pasa_asmbl_19203.p1, internal, 76789, 80509
Valid prediction for GlimmerHMM_glimmerT_41052-T1
Valid prediction for GlimmerHMM_glimmerT_41059-T1
Valid prediction for Augustus_model.g27390.t1
Valid prediction for snap_scaffold_17-snap.2277-T1
Valid prediction for GlimmerHMM_glimmerT_41040-T1
Valid prediction for Augustus_model.g27379.t1
Valid prediction for Augustus_model.g27391.t1
Valid prediction for CodingQuarry_transcript_22172-T1
Valid prediction for Augustus_model.g27383.t1
Valid prediction for GlimmerHMM_glimmerT_41066-T1
Valid prediction for Augustus_model.g27385.t1
Valid prediction for GlimmerHMM_glimmerT_41028-T1
Couldn't classify 256287, 256311
Sorry, prediction pasa_asmbl_19210.p1 fails validation.
(AAG)	 TC	256287-256311	GT	AGG
(GCA)	 AG	258728-258912	GT	ATG
(GGC)	 AG	259228-259584	GA	GAG
-recovered pasa_asmbl_19210.p1, terminal, 259228, 259584
-recovered pasa_asmbl_19210.p1, internal, 258728, 258912
Valid prediction for snap_scaffold_17-snap.2254-T1
Valid prediction for GlimmerHMM_glimmerT_41041-T1
Valid prediction for CodingQuarry_transcript_22171-T1
Valid prediction for GlimmerHMM_glimmerT_41058-T1
Valid prediction for HiQ_model.g27376.t1
Valid prediction for GlimmerHMM_glimmerT_41034-T1
Couldn't classify 330035, 330057
Sorry, prediction pasa_asmbl_19217.p1 fails validation.
(ATG)	 TC	327618-327667	GT	AGG
(GAG)	 AG	328193-328278	GT	AGG
(GCA)	 AG	328680-328790	GT	TGG
(GGC)	 AG	330035-330057	CA	AGC
-recovered pasa_asmbl_19217.p1, initial, 327618, 327667
-recovered pasa_asmbl_19217.p1, internal, 328193, 328278
-recovered pasa_asmbl_19217.p1, internal, 328680, 328790
Valid prediction for snap_scaffold_17-snap.2256-T1
Valid prediction for CodingQuarry_transcript_22175-T1
Valid prediction for GlimmerHMM_glimmerT_41044-T1
Valid prediction for GlimmerHMM_glimmerT_41030-T1
Valid prediction for snap_scaffold_17-snap.2268-T1
Valid prediction for snap_scaffold_17-snap.2275-T1
Couldn't classify 162271, 162348
Sorry, prediction pasa_asmbl_19207.p1 fails validation.
(CTG)	 GG	162271-162348	GT	AGG
(GGA)	 AG	162676-162793	GT	AGG
(CCC)	 AG	162922-163148	CG	AGC
-recovered pasa_asmbl_19207.p1, terminal, 162922, 163148
-recovered pasa_asmbl_19207.p1, internal, 162676, 162793
Valid prediction for GlimmerHMM_glimmerT_41056-T1
Valid prediction for snap_scaffold_17-snap.2290-T1
Valid prediction for snap_scaffold_17-snap.2240-T1
Sorry, intron length (3) is less than minimum required (10)
Valid prediction for CodingQuarry_transcript_22170-T1
Valid prediction for snap_scaffold_17-snap.2224-T1
Valid prediction for GlimmerHMM_glimmerT_41050-T1
Valid prediction for snap_scaffold_17-snap.2247-T1
Couldn't classify 330631, 330779
Sorry, prediction pasa_asmbl_19219.p1 fails validation.
(CCA)	 CC	330631-330779	GT	AGG
(TTT)	 AG	332337-332419	GT	TGG
(GAT)	 AG	333422-333517	GT	AGG
(AGG)	 AG	333659-333777	GT	AGG
(GAT)	 AG	333892-334032	TC	GAT
add_exon() Sorry, pasa_asmbl_19219.p1 333422-333517-terminal-1 is invalid.
-recovered pasa_asmbl_19219.p1, terminal, 333422, 333517
-recovered pasa_asmbl_19219.p1, terminal, 333892, 334032
-recovered pasa_asmbl_19219.p1, internal, 332337, 332419
-recovered pasa_asmbl_19219.p1, internal, 333422, 333517
-recovered pasa_asmbl_19219.p1, internal, 333659, 333777
Couldn't classify 124190, 124499
Couldn't classify 126432, 126541
Sorry, prediction pasa_asmbl_19204.p1 fails validation.
(TTT)	 CT	124190-124499	GT	AGG
(ACG)	 AG	126432-126541	CA	GGC
Valid prediction for Augustus_model.g27378.t1
Valid prediction for snap_scaffold_17-snap.2231-T1
Valid prediction for GlimmerHMM_glimmerT_41053-T1
Valid prediction for snap_scaffold_17-snap.2281-T1
Valid prediction for GlimmerHMM_glimmerT_41069-T1
Valid prediction for GlimmerHMM_glimmerT_41062-T1
Valid prediction for snap_scaffold_17-snap.2248-T1
Valid prediction for snap_scaffold_17-snap.2255-T1
Valid prediction for HiQ_model.g27401.t1
Couldn't classify 354127, 354240
Sorry, prediction pasa_asmbl_19457.p1 fails validation.
(GCC)	 CA	354127-354240	GT	ATG
(TCC)	 AG	354462-354529	GT	GCG
(AGA)	 AG	354740-354798	GT	CGG
(CCC)	 AG	354925-355028	AC	GAA
-recovered pasa_asmbl_19457.p1, terminal, 354925, 355028
-recovered pasa_asmbl_19457.p1, internal, 354462, 354529
-recovered pasa_asmbl_19457.p1, internal, 354740, 354798
Valid prediction for Augustus_model.g27393.t1
Valid prediction for snap_scaffold_17-snap.2288-T1
Valid prediction for Augustus_model.g27388.t1
Valid prediction for GlimmerHMM_glimmerT_41036-T1
Valid prediction for snap_scaffold_17-snap.2244-T1
Valid prediction for snap_scaffold_17-snap.2271-T1
Valid prediction for HiQ_model.g27396.t1
Valid prediction for snap_scaffold_17-snap.2241-T1
Valid prediction for snap_scaffold_17-snap.2222-T1
Valid prediction for snap_scaffold_17-snap.2280-T1

-loading the search evidence (protein and EST search results, strand: +)
-scoring exons (strand: +)

** Processing features (-)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: -)
-loading gene prediction evidence. (strand: -)Valid prediction for GlimmerHMM_glimmerT_41055-T1
Valid prediction for GlimmerHMM_glimmerT_41063-T1
Valid prediction for snap_scaffold_17-snap.2282-T1
Valid prediction for snap_scaffold_17-snap.2227-T1
Valid prediction for snap_scaffold_17-snap.2226-T1
Sorry, intron length (3) is less than minimum required (10)
Valid prediction for snap_scaffold_17-snap.2251-T1
Valid prediction for GlimmerHMM_glimmerT_41037-T1
Couldn't classify 322429, 322542
Sorry, prediction pasa_asmbl_18267.p1 fails validation.
(GAG)	 GG	322429-322542	GT	AGG
(GTC)	 AG	323089-323139	GT	AGG
(GAG)	 AG	323316-323530	GT	AGG
(ATA)	 AG	323660-323867	GT	GGG
(GAG)	 AG	324201-324325	GT	AGG
(GGA)	 AG	324608-324692	CC	AAC
add_exon() Sorry, pasa_asmbl_18267.p1 324201-324325-terminal-2 is invalid.
-recovered pasa_asmbl_18267.p1, terminal, 324201, 324325
-recovered pasa_asmbl_18267.p1, terminal, 324608, 324692
-recovered pasa_asmbl_18267.p1, internal, 323089, 323139
-recovered pasa_asmbl_18267.p1, internal, 323316, 323530
-recovered pasa_asmbl_18267.p1, internal, 323660, 323867
-recovered pasa_asmbl_18267.p1, internal, 324201, 324325
Valid prediction for snap_scaffold_17-snap.2265-T1
Valid prediction for snap_scaffold_17-snap.2235-T1
Valid prediction for GlimmerHMM_glimmerT_41065-T1
Valid prediction for GlimmerHMM_glimmerT_41048-T1
Valid prediction for snap_scaffold_17-snap.2269-T1
Valid prediction for GlimmerHMM_glimmerT_41060-T1
Valid prediction for snap_scaffold_17-snap.2261-T1
Valid prediction for GlimmerHMM_glimmerT_41039-T1
Couldn't classify 321182, 322306
Sorry, prediction pasa_asmbl_18261.p1 fails validation.
(ATG)	 AG	321182-322306	GA	GGG
Valid prediction for snap_scaffold_17-snap.2289-T1
Valid prediction for GlimmerHMM_glimmerT_41045-T1
Valid prediction for Augustus_model.g27394.t1
Valid prediction for CodingQuarry_transcript_22166-T1
Valid prediction for GlimmerHMM_glimmerT_41042-T1
Valid prediction for snap_scaffold_17-snap.2257-T1
Valid prediction for snap_scaffold_17-snap.2230-T1
Valid prediction for HiQ_model.g27382.t1
Valid prediction for HiQ_model.g27381.t1
Valid prediction for Augustus_model.g27374.t1
Valid prediction for GlimmerHMM_glimmerT_41038-T1
Valid prediction for snap_scaffold_17-snap.2249-T1
Valid prediction for GlimmerHMM_glimmerT_41047-T1
Valid prediction for CodingQuarry_transcript_22173-T1
Valid prediction for snap_scaffold_17-snap.2272-T1
Valid prediction for snap_scaffold_17-snap.2279-T1
Couldn't classify 251779, 251991
Couldn't classify 255616, 255741
Sorry, prediction pasa_asmbl_18271.p1 fails validation.
(TCC)	 CA	251779-251991	GT	AGG
(CAC)	 AG	254241-254366	GT	AGG
(CTG)	 AG	255616-255741	TA	GGT
-recovered pasa_asmbl_18271.p1, internal, 254241, 254366
Valid prediction for snap_scaffold_17-snap.2242-T1
Valid prediction for snap_scaffold_17-snap.2278-T1
Valid prediction for pasa_asmbl_18269.p1
Valid prediction for snap_scaffold_17-snap.2253-T1
Valid prediction for GlimmerHMM_glimmerT_41032-T1
Valid prediction for snap_scaffold_17-snap.2218-T1
Valid prediction for GlimmerHMM_glimmerT_41070-T1
Valid prediction for pasa_asmbl_18276.p1
Valid prediction for snap_scaffold_17-snap.2220-T1
Valid prediction for snap_scaffold_17-snap.2246-T1
Valid prediction for GlimmerHMM_glimmerT_41029-T1
Valid prediction for GlimmerHMM_glimmerT_41067-T1
Valid prediction for pasa_asmbl_18491.p1
Valid prediction for Augustus_model.g27398.t1
Valid prediction for Augustus_model.g27375.t1
Valid prediction for Augustus_model.g27389.t1
Valid prediction for GlimmerHMM_glimmerT_41046-T1
Valid prediction for snap_scaffold_17-snap.2252-T1
Sorry, intron length (4) is less than minimum required (10)
Valid prediction for Augustus_model.g27397.t1
Valid prediction for GlimmerHMM_glimmerT_41068-T1
Valid prediction for snap_scaffold_17-snap.2276-T1
Valid prediction for HiQ_model.g27400.t1
Valid prediction for GlimmerHMM_glimmerT_41051-T1
Valid prediction for CodingQuarry_transcript_22168-T1
Valid prediction for snap_scaffold_17-snap.2274-T1
Valid prediction for snap_scaffold_17-snap.2270-T1
Valid prediction for snap_scaffold_17-snap.2263-T1
Valid prediction for snap_scaffold_17-snap.2245-T1
Valid prediction for snap_scaffold_17-snap.2237-T1
Valid prediction for Augustus_model.g27377.t1
Valid prediction for snap_scaffold_17-snap.2287-T1
Valid prediction for snap_scaffold_17-snap.2223-T1
Valid prediction for snap_scaffold_17-snap.2228-T1
Valid prediction for snap_scaffold_17-snap.2267-T1
Valid prediction for snap_scaffold_17-snap.2283-T1
Couldn't classify 178589, 178712
Sorry, prediction pasa_asmbl_18274.p1 fails validation.
(ATG)	 CC	177309-177392	GT	AGG
(ATG)	 AG	177700-177777	GT	AGG
(CTG)	 AG	177866-177982	GT	AGG
(AAT)	 AG	178256-178335	GT	CCG
(GGA)	 AG	178589-178712	GA	TCG
-recovered pasa_asmbl_18274.p1, initial, 177309, 177392
-recovered pasa_asmbl_18274.p1, initial, 177700, 177777
-recovered pasa_asmbl_18274.p1, internal, 177700, 177777
-recovered pasa_asmbl_18274.p1, internal, 177866, 177982
-recovered pasa_asmbl_18274.p1, internal, 178256, 178335
Valid prediction for CodingQuarry_transcript_22169-T1
Valid prediction for GlimmerHMM_glimmerT_41054-T1
Valid prediction for snap_scaffold_17-snap.2233-T1
Valid prediction for snap_scaffold_17-snap.2243-T1
Valid prediction for snap_scaffold_17-snap.2236-T1
Valid prediction for snap_scaffold_17-snap.2260-T1
Valid prediction for snap_scaffold_17-snap.2250-T1
Valid prediction for snap_scaffold_17-snap.2232-T1
Valid prediction for Augustus_model.g27395.t1
Valid prediction for CodingQuarry_transcript_22174-T1
Valid prediction for HiQ_model.g27380.t1
Valid prediction for GlimmerHMM_glimmerT_41031-T1
Valid prediction for GlimmerHMM_glimmerT_41061-T1
Valid prediction for snap_scaffold_17-snap.2284-T1
Valid prediction for snap_scaffold_17-snap.2286-T1
Valid prediction for GlimmerHMM_glimmerT_41064-T1

-loading the search evidence (protein and EST search results, strand: -)
-scoring exons (strand: -)Error with prediction: snap lend_intergenic: 4698, rend_intergenic: 2794  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 11360, rend_intergenic: 4949  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 16129, rend_intergenic: 11780  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 18652, rend_intergenic: 16135  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 38605, rend_intergenic: 29589  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 48905, rend_intergenic: 39164  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 49167, rend_intergenic: 49011  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 49766, rend_intergenic: 49653  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 81021, rend_intergenic: 49839  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 87888, rend_intergenic: 83163  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 119117, rend_intergenic: 112470  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 136159, rend_intergenic: 132546  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 139893, rend_intergenic: 136232  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 143606, rend_intergenic: 140607  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 162428, rend_intergenic: 144072  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 186722, rend_intergenic: 163054  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 196789, rend_intergenic: 187299  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 206678, rend_intergenic: 201095  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 228021, rend_intergenic: 207992  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 235070, rend_intergenic: 228082  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 242748, rend_intergenic: 235785  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 247271, rend_intergenic: 243753  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 248429, rend_intergenic: 247388  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 254319, rend_intergenic: 248821  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 259584, rend_intergenic: 256259  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 277169, rend_intergenic: 264604  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 279555, rend_intergenic: 277331  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 283779, rend_intergenic: 280210  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 288501, rend_intergenic: 284404  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 298861, rend_intergenic: 293570  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 310856, rend_intergenic: 302104  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 313953, rend_intergenic: 312292  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 334032, rend_intergenic: 329973  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 351792, rend_intergenic: 350349  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.

-building DP trellis

-building trellis in range 1 - 357289
-exon list size: 645


building trellis

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3.6    
3.7    
3.9    
4.0    
4.2    
4.3    
4.5    
4.6    
4.8    
4.9    
5.1    
5.3    
5.4    
5.6    
5.7    
5.9    
6.0    
6.2    
6.3    
6.5    
6.6    
6.8    
7.0    
7.1    
7.3    
7.4    
7.6    
7.7    
7.9    
8.0    
8.2    
8.3    
8.5    
8.7    
8.8    
9.0    
9.1    
9.3    
9.4    
9.6    
9.7    
9.9    
10.0    
10.2    
10.4    
10.5    
10.7    
10.8    
11.0    
11.1    
11.3    
11.4    
11.6    
11.7    
11.9    
12.1    
12.2    
12.4    
12.5    
12.7    
12.8    
13.0    
13.1    
13.3    
13.4    
13.6    
13.8    
13.9    
14.1    
14.2    
14.4    
14.5    
14.7    
14.8    
15.0    
15.1    
15.3    
15.5    
15.6    
15.8    
15.9    
16.1    
16.2    
16.4    
16.5    
16.7    
16.8    
17.0    
17.2    
17.3    
17.5    
17.6    
17.8    
17.9    
18.1    
18.2    
18.4    
18.5    
18.7    
18.9    
19.0    
19.2    
19.3    
19.5    
19.6    
19.8    
19.9    
20.1    
20.2    
20.4    
20.6    
20.7    
20.9    
21.0    
21.2    
21.3    
21.5    
21.6    
21.8    
21.9    
22.1    
22.3    
22.4    
22.6    
22.7    
22.9    
23.0    
23.2    
23.3    
23.5    
23.6    
23.8    
24.0    
24.1    
24.3    
24.4    
24.6    
24.7    
24.9    
25.0    
25.2    
25.3    
25.5    
25.7    
25.8    
26.0    
26.1    
26.3    
26.4    
26.6    
26.7    
26.9    
27.0    
27.2    
27.4    
27.5    
27.7    
27.8    
28.0    
28.1    
28.3    
28.4    
28.6    
28.7    
28.9    
29.1    
29.2    
29.4    
29.5    
29.7    
29.8    
30.0    
30.1    
30.3    
30.4    
30.6    
30.8    
30.9    
31.1    
31.2    
31.4    
31.5    
31.7    
31.8    
32.0    
32.1    
32.3    
32.5    
32.6    
32.8    
32.9    
33.1    
33.2    
33.4    
33.5    
33.7    
33.8    
34.0    
34.2    
34.3    
34.5    
34.6    
34.8    
34.9    
35.1    
35.2    
35.4    
35.5    
35.7    
35.9    
36.0    
36.2    
36.3    
36.5    
36.6    
36.8    
36.9    
37.1    
37.2    
37.4    
37.6    
37.7    
37.9    
38.0    
38.2    
38.3    
38.5    
38.6    
38.8    
38.9    
39.1    
39.3    
39.4    
39.6    
39.7    
39.9    
40.0    
40.2    
40.3    
40.5    
40.6    
40.8    
41.0    
41.1    
41.3    
41.4    
41.6    
41.7    
41.9    
42.0    
42.2    
42.3    
42.5    
42.7    
42.8    
43.0    
43.1    
43.3    
43.4    
43.6    
43.7    
43.9    
44.0    
44.2    
44.4    
44.5    
44.7    
44.8    
45.0    
45.1    
45.3    
45.4    
45.6    
45.7    
45.9    
46.1    
46.2    
46.4    
46.5    
46.7    
46.8    
47.0    
47.1    
47.3    
47.4    
47.6    
47.8    
47.9    
48.1    
48.2    
48.4    
48.5    
48.7    
48.8    
49.0    
49.1    
49.3    
49.5    
49.6    
49.8    
49.9    
50.1    
50.2    
50.4    
50.5    
50.7    
50.9    
51.0    
51.2    
51.3    
51.5    
51.6    
51.8    
51.9    
52.1    
52.2    
52.4    
52.6    
52.7    
52.9    
53.0    
53.2    
53.3    
53.5    
53.6    
53.8    
53.9    
54.1    
54.3    
54.4    
54.6    
54.7    
54.9    
55.0    
55.2    
55.3    
55.5    
55.6    
55.8    
56.0    
56.1    
56.3    
56.4    
56.6    
56.7    
56.9    
57.0    
57.2    
57.3    
57.5    
57.7    
57.8    
58.0    
58.1    
58.3    
58.4    
58.6    
58.7    
58.9    
59.0    
59.2    
59.4    
59.5    
59.7    
59.8    
60.0    
60.1    
60.3    
60.4    
60.6    
60.7    
60.9    
61.1    
61.2    
61.4    
61.5    
61.7    
61.8    
62.0    
62.1    
62.3    
62.4    
62.6    
62.8    
62.9    
63.1    
63.2    
63.4    
63.5    
63.7    
63.8    
64.0    
64.1    
64.3    
64.5    
64.6    
64.8    
64.9    
65.1    
65.2    
65.4    
65.5    
65.7    
65.8    
66.0    
66.2    
66.3    
66.5    
66.6    
66.8    
66.9    
67.1    
67.2    
67.4    
67.5    
67.7    
67.9    
68.0    
68.2    
68.3    
68.5    
68.6    
68.8    
68.9    
69.1    
69.2    
69.4    
69.6    
69.7    
69.9    
70.0    
70.2    
70.3    
70.5    
70.6    
70.8    
70.9    
71.1    
71.3    
71.4    
71.6    
71.7    
71.9    
72.0    
72.2    
72.3    
72.5    
72.6    
72.8    
73.0    
73.1    
73.3    
73.4    
73.6    
73.7    
73.9    
74.0    
74.2    
74.3    
74.5    
74.7    
74.8    
75.0    
75.1    
75.3    
75.4    
75.6    
75.7    
75.9    
76.0    
76.2    
76.4    
76.5    
76.7    
76.8    
77.0    
77.1    
77.3    
77.4    
77.6    
77.7    
77.9    
78.1    
78.2    
78.4    
78.5    
78.7    
78.8    
79.0    
79.1    
79.3    
79.4    
79.6    
79.8    
79.9    
80.1    
80.2    
80.4    
80.5    
80.7    
80.8    
81.0    
81.1    
81.3    
81.5    
81.6    
81.8    
81.9    
82.1    
82.2    
82.4    
82.5    
82.7    
82.8    
83.0    
83.2    
83.3    
83.5    
83.6    
83.8    
83.9    
84.1    
84.2    
84.4    
84.5    
84.7    
84.9    
85.0    
85.2    
85.3    
85.5    
85.6    
85.8    
85.9    
86.1    
86.2    
86.4    
86.6    
86.7    
86.9    
87.0    
87.2    
87.3    
87.5    
87.6    
87.8    
87.9    
88.1    
88.3    
88.4    
88.6    
88.7    
88.9    
89.0    
89.2    
89.3    
89.5    
89.6    
89.8    
90.0    
90.1    
90.3    
90.4    
90.6    
90.7    
90.9    
91.0    
91.2    
91.3    
91.5    
91.7    
91.8    
92.0    
92.1    
92.3    
92.4    
92.6    
92.7    
92.9    
93.0    
93.2    
93.4    
93.5    
93.7    
93.8    
94.0    
94.1    
94.3    
94.4    
94.6    
94.7    
94.9    
95.1    
95.2    
95.4    
95.5    
95.7    
95.8    
96.0    
96.1    
96.3    
96.4    
96.6    
96.8    
96.9    
97.1    
97.2    
97.4    
97.5    
97.7    
97.8    
98.0    
98.1    
98.3    
98.5    
98.6    
98.8    
98.9    
99.1    
99.2    
99.4    
99.5    
99.7    
99.8    
-found 51 predictions from path traversal
Error with prediction: snap lend_intergenic: 4698, rend_intergenic: 2794  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 11360, rend_intergenic: 4949  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 16129, rend_intergenic: 11780  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 18652, rend_intergenic: 16135  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 38605, rend_intergenic: 29589  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 48905, rend_intergenic: 39164  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 49167, rend_intergenic: 49011  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 49766, rend_intergenic: 49653  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 81021, rend_intergenic: 49839  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 87888, rend_intergenic: 83163  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 119117, rend_intergenic: 112470  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 136159, rend_intergenic: 132546  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 139893, rend_intergenic: 136232  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 143606, rend_intergenic: 140607  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 162428, rend_intergenic: 144072  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 186722, rend_intergenic: 163054  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 196789, rend_intergenic: 187299  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 206678, rend_intergenic: 201095  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 228021, rend_intergenic: 207992  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 235070, rend_intergenic: 228082  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 242748, rend_intergenic: 235785  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 247271, rend_intergenic: 243753  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 248429, rend_intergenic: 247388  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 254319, rend_intergenic: 248821  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 259584, rend_intergenic: 256259  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 277169, rend_intergenic: 264604  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 279555, rend_intergenic: 277331  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 283779, rend_intergenic: 280210  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 288501, rend_intergenic: 284404  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 298861, rend_intergenic: 293570  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 310856, rend_intergenic: 302104  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 313953, rend_intergenic: 312292  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 334032, rend_intergenic: 329973  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 351792, rend_intergenic: 350349  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.

-reporting highest scoring path thru the trellis.
-found 32 predictions persist after filtering for low support