-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~funannotate/test/fun/predict_misc/EVM/scaffold_17/scaffold_17_10919487-11003982

-reading genomic sequence.

** Processing features (+)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: +)
-loading gene prediction evidence. (strand: +)Valid prediction for snap_scaffold_17-snap.2211-T1
Valid prediction for GlimmerHMM_glimmerT_41014-T1
Valid prediction for GlimmerHMM_glimmerT_41016-T1
Valid prediction for snap_scaffold_17-snap.2208-T1
Valid prediction for snap_scaffold_17-snap.2213-T1
Valid prediction for GlimmerHMM_glimmerT_41024-T1
Valid prediction for GlimmerHMM_glimmerT_41017-T1
Valid prediction for GlimmerHMM_glimmerT_41026-T1
Valid prediction for snap_scaffold_17-snap.2200-T1
Valid prediction for snap_scaffold_17-snap.2209-T1
Valid prediction for GlimmerHMM_glimmerT_41020-T1
Valid prediction for Augustus_model.g27368.t1
Valid prediction for snap_scaffold_17-snap.2203-T1
Valid prediction for snap_scaffold_17-snap.2206-T1
Valid prediction for GlimmerHMM_glimmerT_41019-T1
Valid prediction for GlimmerHMM_glimmerT_41015-T1
Valid prediction for snap_scaffold_17-snap.2205-T1
Valid prediction for snap_scaffold_17-snap.2216-T1
Valid prediction for GlimmerHMM_glimmerT_41021-T1
Valid prediction for Augustus_model.g27372.t1
Valid prediction for GlimmerHMM_glimmerT_41025-T1

-loading the search evidence (protein and EST search results, strand: +)
-scoring exons (strand: +)

** Processing features (-)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: -)
-loading gene prediction evidence. (strand: -)Valid prediction for GlimmerHMM_glimmerT_41018-T1
Valid prediction for snap_scaffold_17-snap.2212-T1
Valid prediction for snap_scaffold_17-snap.2215-T1
Valid prediction for snap_scaffold_17-snap.2202-T1
Valid prediction for snap_scaffold_17-snap.2204-T1
Valid prediction for snap_scaffold_17-snap.2214-T1
Valid prediction for pasa_asmbl_18256.p1
Valid prediction for Augustus_model.g27370.t1
Valid prediction for snap_scaffold_17-snap.2210-T1
Valid prediction for Augustus_model.g27373.t1
Valid prediction for HiQ_model.g27371.t1
Valid prediction for CodingQuarry_transcript_22165-T1
Valid prediction for snap_scaffold_17-snap.2199-T1
Valid prediction for snap_scaffold_17-snap.2207-T1
Valid prediction for Augustus_model.g27369.t1
Valid prediction for GlimmerHMM_glimmerT_41022-T1
Valid prediction for snap_scaffold_17-snap.2201-T1
Valid prediction for GlimmerHMM_glimmerT_41023-T1

-loading the search evidence (protein and EST search results, strand: -)
-scoring exons (strand: -)Error with prediction: snap lend_intergenic: 5501, rend_intergenic: 1706  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 9197, rend_intergenic: 5515  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 16033, rend_intergenic: 13109  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 22826, rend_intergenic: 16282  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 31044, rend_intergenic: 27373  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 43456, rend_intergenic: 34839  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 51158, rend_intergenic: 45812  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 59084, rend_intergenic: 55056  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 65872, rend_intergenic: 61821  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 83815, rend_intergenic: 77194  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.

-building DP trellis

-building trellis in range 1 - 84496
-exon list size: 174


building trellis

0.6    
1.1    
1.7    
2.3    
2.8    
3.4    
4.0    
4.5    
5.1    
5.7    
6.2    
6.8    
7.4    
8.0    
8.5    
9.1    
9.7    
10.2    
10.8    
11.4    
11.9    
12.5    
13.1    
13.6    
14.2    
14.8    
15.3    
15.9    
16.5    
17.0    
17.6    
18.2    
18.8    
19.3    
19.9    
20.5    
21.0    
21.6    
22.2    
22.7    
23.3    
23.9    
24.4    
25.0    
25.6    
26.1    
26.7    
27.3    
27.8    
28.4    
29.0    
29.5    
30.1    
30.7    
31.2    
31.8    
32.4    
33.0    
33.5    
34.1    
34.7    
35.2    
35.8    
36.4    
36.9    
37.5    
38.1    
38.6    
39.2    
39.8    
40.3    
40.9    
41.5    
42.0    
42.6    
43.2    
43.8    
44.3    
44.9    
45.5    
46.0    
46.6    
47.2    
47.7    
48.3    
48.9    
49.4    
50.0    
50.6    
51.1    
51.7    
52.3    
52.8    
53.4    
54.0    
54.5    
55.1    
55.7    
56.2    
56.8    
57.4    
58.0    
58.5    
59.1    
59.7    
60.2    
60.8    
61.4    
61.9    
62.5    
63.1    
63.6    
64.2    
64.8    
65.3    
65.9    
66.5    
67.0    
67.6    
68.2    
68.8    
69.3    
69.9    
70.5    
71.0    
71.6    
72.2    
72.7    
73.3    
73.9    
74.4    
75.0    
75.6    
76.1    
76.7    
77.3    
77.8    
78.4    
79.0    
79.5    
80.1    
80.7    
81.2    
81.8    
82.4    
83.0    
83.5    
84.1    
84.7    
85.2    
85.8    
86.4    
86.9    
87.5    
88.1    
88.6    
89.2    
89.8    
90.3    
90.9    
91.5    
92.0    
92.6    
93.2    
93.8    
94.3    
94.9    
95.5    
96.0    
96.6    
97.2    
97.7    
98.3    
98.9    
99.4    
-found 11 predictions from path traversal
Error with prediction: snap lend_intergenic: 5501, rend_intergenic: 1706  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 9197, rend_intergenic: 5515  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 16033, rend_intergenic: 13109  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 22826, rend_intergenic: 16282  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 31044, rend_intergenic: 27373  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 43456, rend_intergenic: 34839  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 51158, rend_intergenic: 45812  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 59084, rend_intergenic: 55056  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 65872, rend_intergenic: 61821  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 83815, rend_intergenic: 77194  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
GOT 5prime partial gene.

-reporting highest scoring path thru the trellis.
-found 6 predictions persist after filtering for low support