-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~funannotate/test/fun/predict_misc/EVM/scaffold_17/scaffold_17_10773109-10921112

-reading genomic sequence.

** Processing features (+)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: +)
-loading gene prediction evidence. (strand: +)Valid prediction for snap_scaffold_17-snap.2161-T1
Valid prediction for snap_scaffold_17-snap.2198-T1
Valid prediction for GlimmerHMM_glimmerT_41000-T1
Valid prediction for snap_scaffold_17-snap.2188-T1
Valid prediction for snap_scaffold_17-snap.2194-T1
Valid prediction for snap_scaffold_17-snap.2191-T1
Valid prediction for GlimmerHMM_glimmerT_40992-T1
Valid prediction for snap_scaffold_17-snap.2175-T1
Sorry, intron length (6) is less than minimum required (10)
Valid prediction for GlimmerHMM_glimmerT_41002-T1
Valid prediction for snap_scaffold_17-snap.2184-T1
Valid prediction for GlimmerHMM_glimmerT_41007-T1
Valid prediction for Augustus_model.g27364.t1
Valid prediction for snap_scaffold_17-snap.2197-T1
Valid prediction for snap_scaffold_17-snap.2189-T1
Valid prediction for snap_scaffold_17-snap.2182-T1
Valid prediction for snap_scaffold_17-snap.2162-T1
Valid prediction for snap_scaffold_17-snap.2195-T1
Valid prediction for GlimmerHMM_glimmerT_40994-T1
Valid prediction for GlimmerHMM_glimmerT_40998-T1
Valid prediction for GlimmerHMM_glimmerT_41013-T1
Valid prediction for GlimmerHMM_glimmerT_41004-T1
Valid prediction for snap_scaffold_17-snap.2186-T1
Valid prediction for GlimmerHMM_glimmerT_41008-T1
Valid prediction for snap_scaffold_17-snap.2164-T1
Valid prediction for snap_scaffold_17-snap.2187-T1
Valid prediction for snap_scaffold_17-snap.2166-T1
Valid prediction for Augustus_model.g27367.t1
Valid prediction for snap_scaffold_17-snap.2179-T1
Valid prediction for GlimmerHMM_glimmerT_41011-T1
Valid prediction for Augustus_model.g27362.t1
Valid prediction for Augustus_model.g27363.t1
Valid prediction for GlimmerHMM_glimmerT_40997-T1
Valid prediction for snap_scaffold_17-snap.2171-T1

-loading the search evidence (protein and EST search results, strand: +)
-scoring exons (strand: +)

** Processing features (-)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: -)
-loading gene prediction evidence. (strand: -)Valid prediction for GlimmerHMM_glimmerT_41006-T1
Valid prediction for snap_scaffold_17-snap.2193-T1
Valid prediction for snap_scaffold_17-snap.2192-T1
Valid prediction for GlimmerHMM_glimmerT_41010-T1
Valid prediction for snap_scaffold_17-snap.2169-T1
Valid prediction for GlimmerHMM_glimmerT_40993-T1
Valid prediction for snap_scaffold_17-snap.2168-T1
Valid prediction for snap_scaffold_17-snap.2170-T1
Valid prediction for snap_scaffold_17-snap.2183-T1
Valid prediction for snap_scaffold_17-snap.2163-T1
Valid prediction for snap_scaffold_17-snap.2180-T1
Valid prediction for snap_scaffold_17-snap.2196-T1
Valid prediction for snap_scaffold_17-snap.2185-T1
Valid prediction for snap_scaffold_17-snap.2177-T1
Valid prediction for GlimmerHMM_glimmerT_40995-T1
Valid prediction for snap_scaffold_17-snap.2181-T1
Valid prediction for GlimmerHMM_glimmerT_40999-T1
Valid prediction for snap_scaffold_17-snap.2190-T1
Valid prediction for snap_scaffold_17-snap.2174-T1
Valid prediction for GlimmerHMM_glimmerT_41003-T1
Valid prediction for pasa_asmbl_18251.p1
Valid prediction for Augustus_model.g27361.t1
Valid prediction for snap_scaffold_17-snap.2173-T1
Valid prediction for GlimmerHMM_glimmerT_41012-T1
Valid prediction for Augustus_model.g27358.t1
Valid prediction for Augustus_model.g27359.t1
Valid prediction for HiQ_model.g27360.t1
Valid prediction for snap_scaffold_17-snap.2167-T1
Valid prediction for snap_scaffold_17-snap.2178-T1
Valid prediction for GlimmerHMM_glimmerT_40996-T1
Valid prediction for Augustus_model.g27365.t1
Valid prediction for GlimmerHMM_glimmerT_41005-T1
Valid prediction for snap_scaffold_17-snap.2165-T1
Valid prediction for Augustus_model.g27366.t1
Valid prediction for GlimmerHMM_glimmerT_41009-T1
Valid prediction for snap_scaffold_17-snap.2176-T1
Valid prediction for CodingQuarry_transcript_22164-T1
Valid prediction for snap_scaffold_17-snap.2172-T1
Valid prediction for GlimmerHMM_glimmerT_41001-T1

-loading the search evidence (protein and EST search results, strand: -)
-scoring exons (strand: -)Error with prediction: snap lend_intergenic: 6084, rend_intergenic: 5039  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 11318, rend_intergenic: 6125  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 15133, rend_intergenic: 11426  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 44385, rend_intergenic: 41792  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 53517, rend_intergenic: 50834  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 56598, rend_intergenic: 53645  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 91748, rend_intergenic: 89909  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 97470, rend_intergenic: 95610  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 105144, rend_intergenic: 97489  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 122084, rend_intergenic: 112848  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 123383, rend_intergenic: 123003  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 135073, rend_intergenic: 125501  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 139627, rend_intergenic: 136076  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 141012, rend_intergenic: 139712  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 145194, rend_intergenic: 141143  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.

-building DP trellis

-building trellis in range 1 - 148004
-exon list size: 254


building trellis

0.4    
0.8    
1.2    
1.6    
2.0    
2.3    
2.7    
3.1    
3.5    
3.9    
4.3    
4.7    
5.1    
5.5    
5.9    
6.2    
6.6    
7.0    
7.4    
7.8    
8.2    
8.6    
9.0    
9.4    
9.8    
10.2    
10.5    
10.9    
11.3    
11.7    
12.1    
12.5    
12.9    
13.3    
13.7    
14.1    
14.5    
14.8    
15.2    
15.6    
16.0    
16.4    
16.8    
17.2    
17.6    
18.0    
18.4    
18.8    
19.1    
19.5    
19.9    
20.3    
20.7    
21.1    
21.5    
21.9    
22.3    
22.7    
23.0    
23.4    
23.8    
24.2    
24.6    
25.0    
25.4    
25.8    
26.2    
26.6    
27.0    
27.3    
27.7    
28.1    
28.5    
28.9    
29.3    
29.7    
30.1    
30.5    
30.9    
31.2    
31.6    
32.0    
32.4    
32.8    
33.2    
33.6    
34.0    
34.4    
34.8    
35.2    
35.5    
35.9    
36.3    
36.7    
37.1    
37.5    
37.9    
38.3    
38.7    
39.1    
39.5    
39.8    
40.2    
40.6    
41.0    
41.4    
41.8    
42.2    
42.6    
43.0    
43.4    
43.8    
44.1    
44.5    
44.9    
45.3    
45.7    
46.1    
46.5    
46.9    
47.3    
47.7    
48.0    
48.4    
48.8    
49.2    
49.6    
50.0    
50.4    
50.8    
51.2    
51.6    
52.0    
52.3    
52.7    
53.1    
53.5    
53.9    
54.3    
54.7    
55.1    
55.5    
55.9    
56.2    
56.6    
57.0    
57.4    
57.8    
58.2    
58.6    
59.0    
59.4    
59.8    
60.2    
60.5    
60.9    
61.3    
61.7    
62.1    
62.5    
62.9    
63.3    
63.7    
64.1    
64.5    
64.8    
65.2    
65.6    
66.0    
66.4    
66.8    
67.2    
67.6    
68.0    
68.4    
68.8    
69.1    
69.5    
69.9    
70.3    
70.7    
71.1    
71.5    
71.9    
72.3    
72.7    
73.0    
73.4    
73.8    
74.2    
74.6    
75.0    
75.4    
75.8    
76.2    
76.6    
77.0    
77.3    
77.7    
78.1    
78.5    
78.9    
79.3    
79.7    
80.1    
80.5    
80.9    
81.2    
81.6    
82.0    
82.4    
82.8    
83.2    
83.6    
84.0    
84.4    
84.8    
85.2    
85.5    
85.9    
86.3    
86.7    
87.1    
87.5    
87.9    
88.3    
88.7    
89.1    
89.5    
89.8    
90.2    
90.6    
91.0    
91.4    
91.8    
92.2    
92.6    
93.0    
93.4    
93.8    
94.1    
94.5    
94.9    
95.3    
95.7    
96.1    
96.5    
96.9    
97.3    
97.7    
98.0    
98.4    
98.8    
99.2    
99.6    
-found 30 predictions from path traversal
Error with prediction: snap lend_intergenic: 6084, rend_intergenic: 5039  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 11318, rend_intergenic: 6125  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 15133, rend_intergenic: 11426  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 44385, rend_intergenic: 41792  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 53517, rend_intergenic: 50834  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 56598, rend_intergenic: 53645  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 91748, rend_intergenic: 89909  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 97470, rend_intergenic: 95610  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 105144, rend_intergenic: 97489  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 122084, rend_intergenic: 112848  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 123383, rend_intergenic: 123003  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 135073, rend_intergenic: 125501  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 139627, rend_intergenic: 136076  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 141012, rend_intergenic: 139712  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 145194, rend_intergenic: 141143  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.

-reporting highest scoring path thru the trellis.
-found 16 predictions persist after filtering for low support