-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~funannotate/test/fun/predict_misc/EVM/scaffold_17/scaffold_17_10483890-10775221

-reading genomic sequence.

** Processing features (+)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: +)
-loading gene prediction evidence. (strand: +)Valid prediction for snap_scaffold_17-snap.2137-T1
Valid prediction for Augustus_model.g27345.t1
Valid prediction for GlimmerHMM_glimmerT_40973-T1
Valid prediction for GlimmerHMM_glimmerT_40982-T1
Valid prediction for GlimmerHMM_glimmerT_40970-T1
Valid prediction for GlimmerHMM_glimmerT_40958-T1
Valid prediction for Augustus_model.g27352.t1
Valid prediction for snap_scaffold_17-snap.2150-T1
Valid prediction for GlimmerHMM_glimmerT_40966-T1
Valid prediction for snap_scaffold_17-snap.2135-T1
Valid prediction for snap_scaffold_17-snap.2106-T1
Valid prediction for snap_scaffold_17-snap.2139-T1
Valid prediction for snap_scaffold_17-snap.2129-T1
Valid prediction for snap_scaffold_17-snap.2111-T1
Valid prediction for snap_scaffold_17-snap.2148-T1
Valid prediction for GlimmerHMM_glimmerT_40967-T1
Valid prediction for GlimmerHMM_glimmerT_40985-T1
Valid prediction for snap_scaffold_17-snap.2120-T1
Valid prediction for snap_scaffold_17-snap.2112-T1
Valid prediction for GlimmerHMM_glimmerT_40988-T1
Valid prediction for GlimmerHMM_glimmerT_40962-T1
Valid prediction for snap_scaffold_17-snap.2128-T1
Valid prediction for GlimmerHMM_glimmerT_40971-T1
Valid prediction for snap_scaffold_17-snap.2110-T1
Valid prediction for Augustus_model.g27346.t1
Valid prediction for snap_scaffold_17-snap.2117-T1
Valid prediction for snap_scaffold_17-snap.2115-T1
Valid prediction for snap_scaffold_17-snap.2144-T1
Valid prediction for GlimmerHMM_glimmerT_40978-T1
Valid prediction for snap_scaffold_17-snap.2156-T1
Valid prediction for GlimmerHMM_glimmerT_40977-T1
Valid prediction for snap_scaffold_17-snap.2133-T1
Valid prediction for snap_scaffold_17-snap.2107-T1
Valid prediction for snap_scaffold_17-snap.2149-T1
Valid prediction for snap_scaffold_17-snap.2153-T1
Valid prediction for snap_scaffold_17-snap.2131-T1
Valid prediction for GlimmerHMM_glimmerT_40972-T1
Valid prediction for snap_scaffold_17-snap.2124-T1
Valid prediction for snap_scaffold_17-snap.2158-T1
Valid prediction for GlimmerHMM_glimmerT_40968-T1
Valid prediction for GlimmerHMM_glimmerT_40987-T1
Valid prediction for snap_scaffold_17-snap.2126-T1
Valid prediction for snap_scaffold_17-snap.2105-T1
Valid prediction for snap_scaffold_17-snap.2103-T1
Valid prediction for GlimmerHMM_glimmerT_40956-T1
Valid prediction for GlimmerHMM_glimmerT_40965-T1
Valid prediction for snap_scaffold_17-snap.2154-T1
Valid prediction for snap_scaffold_17-snap.2152-T1
Valid prediction for GlimmerHMM_glimmerT_40986-T1
Valid prediction for GlimmerHMM_glimmerT_40989-T1
Valid prediction for snap_scaffold_17-snap.2160-T1
Valid prediction for snap_scaffold_17-snap.2099-T1
Valid prediction for snap_scaffold_17-snap.2127-T1
Valid prediction for snap_scaffold_17-snap.2121-T1
Valid prediction for GlimmerHMM_glimmerT_40959-T1
Valid prediction for GlimmerHMM_glimmerT_40991-T1
Valid prediction for snap_scaffold_17-snap.2142-T1

-loading the search evidence (protein and EST search results, strand: +)
-scoring exons (strand: +)

** Processing features (-)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: -)
-loading gene prediction evidence. (strand: -)Valid prediction for snap_scaffold_17-snap.2130-T1
Valid prediction for Augustus_model.g27350.t1
Valid prediction for snap_scaffold_17-snap.2134-T1
Valid prediction for snap_scaffold_17-snap.2157-T1
Valid prediction for Augustus_model.g27351.t1
Valid prediction for snap_scaffold_17-snap.2143-T1
Valid prediction for GlimmerHMM_glimmerT_40984-T1
Valid prediction for snap_scaffold_17-snap.2132-T1
Valid prediction for snap_scaffold_17-snap.2118-T1
Valid prediction for snap_scaffold_17-snap.2116-T1
Valid prediction for GlimmerHMM_glimmerT_40976-T1
Valid prediction for snap_scaffold_17-snap.2125-T1
Valid prediction for GlimmerHMM_glimmerT_40969-T1
Valid prediction for GlimmerHMM_glimmerT_40974-T1
Valid prediction for snap_scaffold_17-snap.2123-T1
Valid prediction for Augustus_model.g27349.t1
Valid prediction for snap_scaffold_17-snap.2140-T1
Valid prediction for GlimmerHMM_glimmerT_40963-T1
Valid prediction for Augustus_model.g27354.t1
Valid prediction for Augustus_model.g27356.t1
Valid prediction for Augustus_model.g27344.t1
Valid prediction for Augustus_model.g27353.t1
Valid prediction for snap_scaffold_17-snap.2100-T1
Valid prediction for GlimmerHMM_glimmerT_40983-T1
Valid prediction for Augustus_model.g27348.t1
Valid prediction for snap_scaffold_17-snap.2122-T1
Valid prediction for snap_scaffold_17-snap.2108-T1
Valid prediction for GlimmerHMM_glimmerT_40957-T1
Valid prediction for snap_scaffold_17-snap.2104-T1
Valid prediction for snap_scaffold_17-snap.2145-T1
Valid prediction for snap_scaffold_17-snap.2147-T1
Valid prediction for snap_scaffold_17-snap.2113-T1
Valid prediction for GlimmerHMM_glimmerT_40981-T1
Valid prediction for GlimmerHMM_glimmerT_40964-T1
Valid prediction for GlimmerHMM_glimmerT_40990-T1
Valid prediction for GlimmerHMM_glimmerT_40975-T1
Valid prediction for snap_scaffold_17-snap.2114-T1
Valid prediction for snap_scaffold_17-snap.2138-T1
Valid prediction for Augustus_model.g27357.t1
Valid prediction for GlimmerHMM_glimmerT_40980-T1
Valid prediction for snap_scaffold_17-snap.2119-T1
Valid prediction for snap_scaffold_17-snap.2159-T1
Valid prediction for GlimmerHMM_glimmerT_40961-T1
Valid prediction for snap_scaffold_17-snap.2109-T1
Valid prediction for snap_scaffold_17-snap.2101-T1
Valid prediction for snap_scaffold_17-snap.2151-T1
Valid prediction for Augustus_model.g27347.t1
Valid prediction for snap_scaffold_17-snap.2146-T1
Valid prediction for Augustus_model.g27355.t1
Valid prediction for GlimmerHMM_glimmerT_40960-T1
Valid prediction for GlimmerHMM_glimmerT_40979-T1
Valid prediction for snap_scaffold_17-snap.2141-T1
Valid prediction for snap_scaffold_17-snap.2136-T1
Sorry, intron length (6) is less than minimum required (10)
Valid prediction for snap_scaffold_17-snap.2102-T1
Valid prediction for snap_scaffold_17-snap.2155-T1

-loading the search evidence (protein and EST search results, strand: -)
-scoring exons (strand: -)Error with prediction: snap lend_intergenic: 8114, rend_intergenic: 3962  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 22930, rend_intergenic: 17734  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 39968, rend_intergenic: 23694  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 46081, rend_intergenic: 40027  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 67351, rend_intergenic: 49273  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 76616, rend_intergenic: 68874  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 88042, rend_intergenic: 79110  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 99403, rend_intergenic: 88044  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 109447, rend_intergenic: 105517  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 117929, rend_intergenic: 113739  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 129323, rend_intergenic: 122997  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 145135, rend_intergenic: 132160  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 152797, rend_intergenic: 151547  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 155030, rend_intergenic: 153540  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 159291, rend_intergenic: 155456  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 166280, rend_intergenic: 163562  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 169489, rend_intergenic: 169155  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 185801, rend_intergenic: 175904  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 196122, rend_intergenic: 190344  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 200070, rend_intergenic: 197318  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 202472, rend_intergenic: 200219  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 211553, rend_intergenic: 209203  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 234704, rend_intergenic: 220776  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 247782, rend_intergenic: 246237  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 254947, rend_intergenic: 249712  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 274443, rend_intergenic: 271131  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 277437, rend_intergenic: 276094  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 283752, rend_intergenic: 278202  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 283891, rend_intergenic: 283825  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 289219, rend_intergenic: 283937  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.

-building DP trellis

-building trellis in range 1 - 291332
-exon list size: 473


building trellis

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35.8    
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41.9    
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99.4    
99.6    
99.8    
-found 42 predictions from path traversal
Error with prediction: snap lend_intergenic: 8114, rend_intergenic: 3962  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 22930, rend_intergenic: 17734  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 39968, rend_intergenic: 23694  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 46081, rend_intergenic: 40027  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 67351, rend_intergenic: 49273  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 76616, rend_intergenic: 68874  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 88042, rend_intergenic: 79110  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 99403, rend_intergenic: 88044  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 109447, rend_intergenic: 105517  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 117929, rend_intergenic: 113739  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 129323, rend_intergenic: 122997  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 145135, rend_intergenic: 132160  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 152797, rend_intergenic: 151547  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 155030, rend_intergenic: 153540  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 159291, rend_intergenic: 155456  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 166280, rend_intergenic: 163562  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 169489, rend_intergenic: 169155  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 185801, rend_intergenic: 175904  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 196122, rend_intergenic: 190344  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 200070, rend_intergenic: 197318  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 202472, rend_intergenic: 200219  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 211553, rend_intergenic: 209203  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 234704, rend_intergenic: 220776  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 247782, rend_intergenic: 246237  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 254947, rend_intergenic: 249712  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 274443, rend_intergenic: 271131  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 277437, rend_intergenic: 276094  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 283752, rend_intergenic: 278202  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 283891, rend_intergenic: 283825  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 289219, rend_intergenic: 283937  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.

-reporting highest scoring path thru the trellis.
-found 14 predictions persist after filtering for low support