-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~funannotate/test/fun/predict_misc/EVM/scaffold_17/scaffold_17_1-180880

-reading genomic sequence.

** Processing features (+)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: +)
-loading gene prediction evidence. (strand: +)Valid prediction for GlimmerHMM_glimmerT_39563-T1
Valid prediction for snap_scaffold_17-snap.16-T1
Valid prediction for Augustus_model.g26354.t1
Valid prediction for snap_scaffold_17-snap.14-T1
Valid prediction for Augustus_model.g26357.t1
Valid prediction for Augustus_model.g26351.t1
Valid prediction for snap_scaffold_17-snap.1-T1
Valid prediction for GlimmerHMM_glimmerT_39568-T1
Valid prediction for GlimmerHMM_glimmerT_39582-T1
Valid prediction for GlimmerHMM_glimmerT_39584-T1
Valid prediction for snap_scaffold_17-snap.12-T1
Valid prediction for snap_scaffold_17-snap.4-T1
Valid prediction for snap_scaffold_17-snap.5-T1
Valid prediction for snap_scaffold_17-snap.23-T1
Sorry, intron length (3) is less than minimum required (10)
Valid prediction for snap_scaffold_17-snap.6-T1
Couldn't classify 3510, 3606
Sorry, prediction pasa_asmbl_18533.p1 fails validation.
(CGG)	 GG	3510-3606	GT	AGG
(TGA)	 AG	4096-4409	CT	AAC
-recovered pasa_asmbl_18533.p1, terminal, 4096, 4409
Valid prediction for snap_scaffold_17-snap.22-T1
Valid prediction for GlimmerHMM_glimmerT_39565-T1
Couldn't classify 19737, 20118
Sorry, prediction pasa_asmbl_18535.p1 fails validation.
(GGA)	 AG	19737-20118	GT	AAG
(GTA)	 AG	20539-20694	GT	CAG
(ACA)	 AG	21270-21413	GT	AGG
(CTC)	 AG	21650-21882	GC	AAG
-recovered pasa_asmbl_18535.p1, terminal, 21650, 21882
-recovered pasa_asmbl_18535.p1, internal, 19737, 20118
-recovered pasa_asmbl_18535.p1, internal, 20539, 20694
-recovered pasa_asmbl_18535.p1, internal, 21270, 21413
-recovered pasa_asmbl_18535.p1, internal, 21650, 21882
Valid prediction for GlimmerHMM_glimmerT_39575-T1
Valid prediction for Augustus_model.g26365.t1
Valid prediction for snap_scaffold_17-snap.2-T1
Valid prediction for GlimmerHMM_glimmerT_39569-T1
Valid prediction for GlimmerHMM_glimmerT_39572-T1
Valid prediction for snap_scaffold_17-snap.11-T1
Valid prediction for snap_scaffold_17-snap.20-T1
Valid prediction for Augustus_model.g26352.t1
Valid prediction for Augustus_model.g26359.t1
Valid prediction for snap_scaffold_17-snap.19-T1
Valid prediction for Augustus_model.g26350.t1
Valid prediction for snap_scaffold_17-snap.27-T1
Valid prediction for Augustus_model.g26356.t1
Valid prediction for GlimmerHMM_glimmerT_39562-T1
Valid prediction for snap_scaffold_17-snap.17-T1
Valid prediction for snap_scaffold_17-snap.3-T1
Valid prediction for GlimmerHMM_glimmerT_39581-T1
Valid prediction for GlimmerHMM_glimmerT_39577-T1
Valid prediction for GlimmerHMM_glimmerT_39561-T1
Valid prediction for snap_scaffold_17-snap.21-T1

-loading the search evidence (protein and EST search results, strand: +)
-scoring exons (strand: +)

** Processing features (-)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: -)
-loading gene prediction evidence. (strand: -)Valid prediction for Augustus_model.g26353.t1
Valid prediction for snap_scaffold_17-snap.24-T1
Valid prediction for Augustus_model.g26358.t1
Valid prediction for GlimmerHMM_glimmerT_39576-T1
Valid prediction for Augustus_model.g26355.t1
Valid prediction for GlimmerHMM_glimmerT_39567-T1
Valid prediction for snap_scaffold_17-snap.7-T1
Valid prediction for snap_scaffold_17-snap.26-T1
Valid prediction for Augustus_model.g26364.t1
Valid prediction for GlimmerHMM_glimmerT_39570-T1
Valid prediction for GlimmerHMM_glimmerT_39585-T1
Valid prediction for snap_scaffold_17-snap.13-T1
Valid prediction for Augustus_model.g26360.t1
Valid prediction for Augustus_model.g26361.t1
Valid prediction for snap_scaffold_17-snap.28-T1
Valid prediction for snap_scaffold_17-snap.18-T1
Valid prediction for GlimmerHMM_glimmerT_39566-T1
Valid prediction for Augustus_model.g26362.t1
Valid prediction for GlimmerHMM_glimmerT_39571-T1
Valid prediction for GlimmerHMM_glimmerT_39574-T1
Valid prediction for Augustus_model.g26363.t1
Valid prediction for snap_scaffold_17-snap.10-T1
Valid prediction for GlimmerHMM_glimmerT_39578-T1
Valid prediction for GlimmerHMM_glimmerT_39564-T1
Valid prediction for GlimmerHMM_glimmerT_39573-T1
Valid prediction for snap_scaffold_17-snap.15-T1
Valid prediction for snap_scaffold_17-snap.9-T1
Valid prediction for snap_scaffold_17-snap.25-T1
Valid prediction for snap_scaffold_17-snap.8-T1
Valid prediction for GlimmerHMM_glimmerT_39580-T1
Valid prediction for GlimmerHMM_glimmerT_39579-T1
Valid prediction for GlimmerHMM_glimmerT_39583-T1

-loading the search evidence (protein and EST search results, strand: -)
-scoring exons (strand: -)Error with prediction: snap lend_intergenic: 87946, rend_intergenic: 83709  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 99256, rend_intergenic: 93757  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 134260, rend_intergenic: 128366  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 154303, rend_intergenic: 140734  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.

-building DP trellis

-building trellis in range 1 - 180880
-exon list size: 181


building trellis

0.5    
1.1    
1.6    
2.2    
2.7    
3.3    
3.8    
4.4    
4.9    
5.5    
6.0    
6.6    
7.1    
7.7    
8.2    
8.7    
9.3    
9.8    
10.4    
10.9    
11.5    
12.0    
12.6    
13.1    
13.7    
14.2    
14.8    
15.3    
15.8    
16.4    
16.9    
17.5    
18.0    
18.6    
19.1    
19.7    
20.2    
20.8    
21.3    
21.9    
22.4    
23.0    
23.5    
24.0    
24.6    
25.1    
25.7    
26.2    
26.8    
27.3    
27.9    
28.4    
29.0    
29.5    
30.1    
30.6    
31.1    
31.7    
32.2    
32.8    
33.3    
33.9    
34.4    
35.0    
35.5    
36.1    
36.6    
37.2    
37.7    
38.3    
38.8    
39.3    
39.9    
40.4    
41.0    
41.5    
42.1    
42.6    
43.2    
43.7    
44.3    
44.8    
45.4    
45.9    
46.4    
47.0    
47.5    
48.1    
48.6    
49.2    
49.7    
50.3    
50.8    
51.4    
51.9    
52.5    
53.0    
53.6    
54.1    
54.6    
55.2    
55.7    
56.3    
56.8    
57.4    
57.9    
58.5    
59.0    
59.6    
60.1    
60.7    
61.2    
61.7    
62.3    
62.8    
63.4    
63.9    
64.5    
65.0    
65.6    
66.1    
66.7    
67.2    
67.8    
68.3    
68.9    
69.4    
69.9    
70.5    
71.0    
71.6    
72.1    
72.7    
73.2    
73.8    
74.3    
74.9    
75.4    
76.0    
76.5    
77.0    
77.6    
78.1    
78.7    
79.2    
79.8    
80.3    
80.9    
81.4    
82.0    
82.5    
83.1    
83.6    
84.2    
84.7    
85.2    
85.8    
86.3    
86.9    
87.4    
88.0    
88.5    
89.1    
89.6    
90.2    
90.7    
91.3    
91.8    
92.3    
92.9    
93.4    
94.0    
94.5    
95.1    
95.6    
96.2    
96.7    
97.3    
97.8    
98.4    
98.9    
99.5    
-found 24 predictions from path traversal
Error with prediction: snap lend_intergenic: 87946, rend_intergenic: 83709  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 99256, rend_intergenic: 93757  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 134260, rend_intergenic: 128366  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 154303, rend_intergenic: 140734  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.

-reporting highest scoring path thru the trellis.
-found 20 predictions persist after filtering for low support

-building DP trellis

-building trellis in range 136197 - 180880
-exon list size: 9


building trellis

9.1    
18.2    
27.3    
36.4    
45.5    
54.5    
63.6    
72.7    
81.8    
90.9    
-found 1 predictions from path traversal
GOT 5prime partial gene.

-reporting highest scoring path thru the trellis.
-found 1 predictions persist after filtering for low support

-building DP trellis

-building trellis in range 136197 - 151205
-exon list size: 6


building trellis

12.5    
25.0    
37.5    
50.0    
62.5    
75.0    
87.5    
-found 1 predictions from path traversal

-reporting highest scoring path thru the trellis.
-found 0 predictions persist after filtering for low support

-building DP trellis

-building trellis in range 136197 - 151009
-exon list size: 5


building trellis

14.3    
28.6    
42.9    
57.1    
71.4    
85.7    
-found 1 predictions from path traversal

-reporting highest scoring path thru the trellis.
-found 0 predictions persist after filtering for low support

-building DP trellis

-building trellis in range 140639 - 151009
-exon list size: 4


building trellis

16.7    
33.3    
50.0    
66.7    
83.3    
-found 1 predictions from path traversal

-reporting highest scoring path thru the trellis.
-found 0 predictions persist after filtering for low support

-building DP trellis

-building trellis in range 151423 - 180880
-exon list size: 1


building trellis

33.3    
66.7    
-found 1 predictions from path traversal
GOT 5prime partial gene.

-reporting highest scoring path thru the trellis.
-found 0 predictions persist after filtering for low support
	-no exons in range 154304 - 180880