-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~funannotate/test/fun/predict_misc/EVM/scaffold_1694

-reading genomic sequence.

** Processing features (+)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: +)
-loading gene prediction evidence. (strand: +)Valid prediction for GlimmerHMM_glimmerT_61282-T1
Couldn't classify 108, 277
Sorry, prediction snap_scaffold_1694-snap.1-T1 fails validation.
(GGG)	 AG	108-277	GT	AAG
(CAA)	 AG	501-714	GT	GGG
(AAT)	 AG	1361-1589	AT	AAA
-recovered snap_scaffold_1694-snap.1-T1, terminal, 1361, 1589
-recovered snap_scaffold_1694-snap.1-T1, internal, 108, 277
-recovered snap_scaffold_1694-snap.1-T1, internal, 501, 714
Couldn't classify 108, 277
Sorry, prediction Augustus_model.g40608.t1 fails validation.
(GGG)	 AG	108-277	GT	AAG
(CAA)	 AG	501-560	GT	AGG
(GAG)	 AG	1441-1589	AT	AAA
-recovered Augustus_model.g40608.t1, terminal, 1441, 1589
-recovered Augustus_model.g40608.t1, internal, 108, 277
-recovered Augustus_model.g40608.t1, internal, 501, 560

-loading the search evidence (protein and EST search results, strand: +)
-scoring exons (strand: +)

** Processing features (-)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: -)
-loading gene prediction evidence. (strand: -)
-loading the search evidence (protein and EST search results, strand: -)
-scoring exons (strand: -)
-building DP trellis

-building trellis in range 1 - 2044
-exon list size: 8


building trellis

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20.0    
30.0    
40.0    
50.0    
60.0    
70.0    
80.0    
90.0    
-found 1 predictions from path traversal
GOT 5prime partial gene.

-reporting highest scoring path thru the trellis.
-found 1 predictions persist after filtering for low support