-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~funannotate/test/fun/predict_misc/EVM/scaffold_1693

-reading genomic sequence.

** Processing features (+)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: +)
-loading gene prediction evidence. (strand: +)
-loading the search evidence (protein and EST search results, strand: +)
-scoring exons (strand: +)

** Processing features (-)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: -)
-loading gene prediction evidence. (strand: -)Valid prediction for GlimmerHMM_glimmerT_61281-T1
add_exon() Sorry, GlimmerHMM_glimmerT_61281-T1 1446-2016-terminal-1 is invalid.
Couldn't classify 1833, 1943
Sorry, prediction snap_scaffold_1693-snap.1-T1 fails validation.
(ATG)	 AA	508-544	GT	AGG
(GGC)	 AG	1406-1670	GT	AAG
(AGA)	 AG	1833-1943	GT	GGG
-recovered snap_scaffold_1693-snap.1-T1, initial, 508, 544
-recovered snap_scaffold_1693-snap.1-T1, internal, 1406, 1670
-recovered snap_scaffold_1693-snap.1-T1, internal, 1833, 1943

-loading the search evidence (protein and EST search results, strand: -)
-scoring exons (strand: -)
-building DP trellis

-building trellis in range 1 - 2045
-exon list size: 4


building trellis

16.7    
33.3    
50.0    
66.7    
83.3    
-found 1 predictions from path traversal
GOT 5prime partial gene.

-reporting highest scoring path thru the trellis.
-found 1 predictions persist after filtering for low support