-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~funannotate/test/fun/predict_misc/EVM/scaffold_1690

-reading genomic sequence.

** Processing features (+)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: +)
-loading gene prediction evidence. (strand: +)Valid prediction for snap_scaffold_1690-snap.1-T1

-loading the search evidence (protein and EST search results, strand: +)
-scoring exons (strand: +)

** Processing features (-)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: -)
-loading gene prediction evidence. (strand: -)Couldn't classify 95, 288
Sorry, prediction GlimmerHMM_glimmerT_61279-T1 fails validation.
(AGG)	 AG	95-288	GT	AGG
(GTC)	 AG	797-944	GT	GGG
(AAG)	 AG	1678-1922	CA	AAC
-recovered GlimmerHMM_glimmerT_61279-T1, terminal, 1678, 1922
-recovered GlimmerHMM_glimmerT_61279-T1, internal, 95, 288
-recovered GlimmerHMM_glimmerT_61279-T1, internal, 797, 944
Couldn't classify 57, 288
Couldn't classify 1670, 1853
Sorry, prediction snap_scaffold_1690-snap.2-T1 fails validation.
(GCT)	 AG	57-288	GT	AGG
(GTC)	 AG	797-944	GT	GGG
(ATG)	 AG	1101-1203	GT	AGG
(TAT)	 AG	1670-1853	GT	AGG
add_exon() Sorry, snap_scaffold_1690-snap.2-T1 1101-1203-initial-1 is invalid.
-recovered snap_scaffold_1690-snap.2-T1, initial, 1101, 1203
-recovered snap_scaffold_1690-snap.2-T1, internal, 57, 288
-recovered snap_scaffold_1690-snap.2-T1, internal, 797, 944
-recovered snap_scaffold_1690-snap.2-T1, internal, 1101, 1203
-recovered snap_scaffold_1690-snap.2-T1, internal, 1670, 1853
Couldn't classify 95, 288
Sorry, prediction Augustus_model.g40606.t1 fails validation.
(AGG)	 AG	95-288	GT	AGG
(GTC)	 AG	797-944	GT	GGG
(ATG)	 AG	1101-1203	GT	AGG
(TAT)	 AG	1670-1853	GT	AGG
(GTG)	 AG	1988-1993	CA	AAC
add_exon() Sorry, Augustus_model.g40606.t1 1101-1203-initial-1 is invalid.
-recovered Augustus_model.g40606.t1, initial, 1101, 1203
-recovered Augustus_model.g40606.t1, terminal, 1988, 1993
-recovered Augustus_model.g40606.t1, internal, 95, 288
-recovered Augustus_model.g40606.t1, internal, 797, 944
-recovered Augustus_model.g40606.t1, internal, 1101, 1203
-recovered Augustus_model.g40606.t1, internal, 1670, 1853

-loading the search evidence (protein and EST search results, strand: -)
-scoring exons (strand: -)Error with prediction: snap lend_intergenic: 1476, rend_intergenic: 196  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.

-building DP trellis

-building trellis in range 1 - 2048
-exon list size: 13


building trellis

6.7    
13.3    
20.0    
26.7    
33.3    
40.0    
46.7    
53.3    
60.0    
66.7    
73.3    
80.0    
86.7    
93.3    
-found 1 predictions from path traversal
Error with prediction: snap lend_intergenic: 1476, rend_intergenic: 196  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
GOT 5prime partial gene.

-reporting highest scoring path thru the trellis.
-found 1 predictions persist after filtering for low support