-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~funannotate/test/fun/predict_misc/EVM/scaffold_169

-reading genomic sequence.

** Processing features (+)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: +)
-loading gene prediction evidence. (strand: +)Couldn't classify 346, 387
Sorry, prediction Augustus_model.g39703.t1 fails validation.
(ATC)	 AG	346-387	GT	TTG
(GAT)	 AG	841-1054	AG	GAA
-recovered Augustus_model.g39703.t1, terminal, 841, 1054
-recovered Augustus_model.g39703.t1, internal, 346, 387
Valid prediction for snap_scaffold_169-snap.2-T1
Valid prediction for GlimmerHMM_glimmerT_59948-T1
Valid prediction for GlimmerHMM_glimmerT_59946-T1
add_exon() Sorry, GlimmerHMM_glimmerT_59946-T1 841-1054-terminal-1 is invalid.
Valid prediction for GlimmerHMM_glimmerT_59947-T1
Valid prediction for Augustus_model.g39704.t1
Valid prediction for GlimmerHMM_glimmerT_59949-T1
Valid prediction for snap_scaffold_169-snap.3-T1
Valid prediction for snap_scaffold_169-snap.1-T1
add_exon() Sorry, snap_scaffold_169-snap.1-T1 841-1054-terminal-1 is invalid.

-loading the search evidence (protein and EST search results, strand: +)
-scoring exons (strand: +)

** Processing features (-)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: -)
-loading gene prediction evidence. (strand: -)Couldn't classify 1554, 1828
Sorry, prediction snap_scaffold_169-snap.4-T1 fails validation.
(GCC)	 AG	1554-1828	GT	TGG
(TGA)	 AG	3533-3645	AG	GAA
-recovered snap_scaffold_169-snap.4-T1, terminal, 3533, 3645
-recovered snap_scaffold_169-snap.4-T1, internal, 1554, 1828

-loading the search evidence (protein and EST search results, strand: -)
-scoring exons (strand: -)Error with prediction: snap lend_intergenic: 8337, rend_intergenic: 7602  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.

-building DP trellis

-building trellis in range 1 - 11246
-exon list size: 19


building trellis

4.8    
9.5    
14.3    
19.0    
23.8    
28.6    
33.3    
38.1    
42.9    
47.6    
52.4    
57.1    
61.9    
66.7    
71.4    
76.2    
81.0    
85.7    
90.5    
95.2    
-found 4 predictions from path traversal
Error with prediction: snap lend_intergenic: 8337, rend_intergenic: 7602  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
GOT 5prime partial gene.
GOT 5prime partial gene.

-reporting highest scoring path thru the trellis.
-found 3 predictions persist after filtering for low support