-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~funannotate/test/fun/predict_misc/EVM/scaffold_1683

-reading genomic sequence.

** Processing features (+)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: +)
-loading gene prediction evidence. (strand: +)Couldn't classify 1, 59
Sorry, prediction Augustus_model.g40605.t1 fails validation.
(CCC)	 CC	1-59	GT	CGG
(CTA)	 AG	166-378	GT	AGG
(AAA)	 AG	735-984	GT	ATG
(CTA)	 AG	1461-1633	GC	GAG
-recovered Augustus_model.g40605.t1, terminal, 1461, 1633
-recovered Augustus_model.g40605.t1, internal, 166, 378
-recovered Augustus_model.g40605.t1, internal, 735, 984
-recovered Augustus_model.g40605.t1, internal, 1461, 1633
Couldn't classify 166, 453
Sorry, prediction snap_scaffold_1683-snap.1-T1 fails validation.
(CTA)	 AG	166-453	GT	ACG
(AAA)	 AG	735-984	GT	ATG
(CTA)	 AG	1461-1633	GC	GAG
-recovered snap_scaffold_1683-snap.1-T1, terminal, 1461, 1633
-recovered snap_scaffold_1683-snap.1-T1, internal, 166, 453
-recovered snap_scaffold_1683-snap.1-T1, internal, 735, 984
-recovered snap_scaffold_1683-snap.1-T1, internal, 1461, 1633
Valid prediction for GlimmerHMM_glimmerT_61277-T1
Valid prediction for GlimmerHMM_glimmerT_61278-T1

-loading the search evidence (protein and EST search results, strand: +)
-scoring exons (strand: +)

** Processing features (-)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: -)
-loading gene prediction evidence. (strand: -)
-loading the search evidence (protein and EST search results, strand: -)
-scoring exons (strand: -)
-building DP trellis

-building trellis in range 1 - 2054
-exon list size: 7


building trellis

11.1    
22.2    
33.3    
44.4    
55.6    
66.7    
77.8    
88.9    
-found 1 predictions from path traversal
GOT 5prime partial gene.

-reporting highest scoring path thru the trellis.
-found 1 predictions persist after filtering for low support