-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~funannotate/test/fun/predict_misc/EVM/scaffold_1677

-reading genomic sequence.

** Processing features (+)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: +)
-loading gene prediction evidence. (strand: +)Couldn't classify 318, 456
Sorry, prediction Augustus_model.g40604.t1 fails validation.
(ACA)	 AG	318-456	GT	CGG
(TGC)	 AG	1229-1380	GT	AGG
(GAG)	 AG	1649-1823	GT	GGG
(AGT)	 AG	1975-2043	TC	GAT
-recovered Augustus_model.g40604.t1, terminal, 1975, 2043
-recovered Augustus_model.g40604.t1, internal, 318, 456
-recovered Augustus_model.g40604.t1, internal, 1229, 1380
-recovered Augustus_model.g40604.t1, internal, 1649, 1823
Couldn't classify 318, 456
Couldn't classify 1649, 1823
Sorry, prediction snap_scaffold_1677-snap.1-T1 fails validation.
(ACA)	 AG	318-456	GT	CGG
(TGC)	 AG	1229-1380	GT	AGG
(GAG)	 AG	1649-1823	GT	GGG
-recovered snap_scaffold_1677-snap.1-T1, internal, 318, 456
-recovered snap_scaffold_1677-snap.1-T1, internal, 1229, 1380
-recovered snap_scaffold_1677-snap.1-T1, internal, 1649, 1823
Couldn't classify 1649, 1823
Sorry, prediction GlimmerHMM_glimmerT_61276-T1 fails validation.
(ATG)	 TG	356-456	GT	CGG
(GTC)	 AG	1234-1380	GT	AGG
(GAG)	 AG	1649-1823	GT	GGG
-recovered GlimmerHMM_glimmerT_61276-T1, initial, 356, 456
-recovered GlimmerHMM_glimmerT_61276-T1, internal, 1234, 1380
-recovered GlimmerHMM_glimmerT_61276-T1, internal, 1649, 1823

-loading the search evidence (protein and EST search results, strand: +)
-scoring exons (strand: +)

** Processing features (-)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: -)
-loading gene prediction evidence. (strand: -)
-loading the search evidence (protein and EST search results, strand: -)
-scoring exons (strand: -)
-building DP trellis

-building trellis in range 1 - 2060
-exon list size: 9


building trellis

9.1    
18.2    
27.3    
36.4    
45.5    
54.5    
63.6    
72.7    
81.8    
90.9    
-found 1 predictions from path traversal
GOT 5prime partial gene.

-reporting highest scoring path thru the trellis.
-found 1 predictions persist after filtering for low support