-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~funannotate/test/fun/predict_misc/EVM/scaffold_1676

-reading genomic sequence.

** Processing features (+)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: +)
-loading gene prediction evidence. (strand: +)Valid prediction for snap_scaffold_1676-snap.1-T1

-loading the search evidence (protein and EST search results, strand: +)
-scoring exons (strand: +)

** Processing features (-)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: -)
-loading gene prediction evidence. (strand: -)Couldn't classify 1, 140
Sorry, prediction HiQ_model.g40603.t1 fails validation.
(CCT)	 AA	1-140	GT	AGG
(GCA)	 AG	319-416	GT	AGG
(GTA)	 AG	627-774	TA	GAT
-recovered HiQ_model.g40603.t1, terminal, 627, 774
-recovered HiQ_model.g40603.t1, internal, 319, 416
Couldn't classify 39, 140
Couldn't classify 627, 765
Sorry, prediction pasa_asmbl_17621.p1 fails validation.
(TCC)	 GT	39-140	GT	AGG
(GCA)	 AG	319-416	GT	AGG
(GTA)	 AG	627-765	GG	CAG
-recovered pasa_asmbl_17621.p1, internal, 319, 416
Couldn't classify 38, 140
Sorry, prediction snap_scaffold_1676-snap.2-T1 fails validation.
(TTC)	 AG	38-140	GT	AGG
(GCA)	 AG	319-416	GT	AGG
(GTA)	 AG	627-766	GT	AGG
(GAT)	 AG	1517-1548	TT	GAT
-recovered snap_scaffold_1676-snap.2-T1, terminal, 1517, 1548
-recovered snap_scaffold_1676-snap.2-T1, internal, 38, 140
-recovered snap_scaffold_1676-snap.2-T1, internal, 319, 416
-recovered snap_scaffold_1676-snap.2-T1, internal, 627, 766
Couldn't classify 38, 140
Sorry, prediction GlimmerHMM_glimmerT_61275-T1 fails validation.
(TTC)	 AG	38-140	GT	AGG
(GCA)	 AG	319-416	GT	AGG
(GTA)	 AG	627-774	TA	GAT
-recovered GlimmerHMM_glimmerT_61275-T1, terminal, 627, 774
-recovered GlimmerHMM_glimmerT_61275-T1, internal, 38, 140
-recovered GlimmerHMM_glimmerT_61275-T1, internal, 319, 416

-loading the search evidence (protein and EST search results, strand: -)
-scoring exons (strand: -)Error with prediction: snap lend_intergenic: 1814, rend_intergenic: 516  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.

-building DP trellis

-building trellis in range 1 - 2063
-exon list size: 10


building trellis

8.3    
16.7    
25.0    
33.3    
41.7    
50.0    
58.3    
66.7    
75.0    
83.3    
91.7    
-found 1 predictions from path traversal
Error with prediction: snap lend_intergenic: 1814, rend_intergenic: 516  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
GOT 5prime partial gene.

-reporting highest scoring path thru the trellis.
-found 1 predictions persist after filtering for low support