-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~funannotate/test/fun/predict_misc/EVM/scaffold_167

-reading genomic sequence.

** Processing features (+)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: +)
-loading gene prediction evidence. (strand: +)Valid prediction for Augustus_model.g39699.t1
Valid prediction for GlimmerHMM_glimmerT_59943-T1
Couldn't classify 11542, 11607
Sorry, prediction snap_scaffold_167-snap.4-T1 fails validation.
(ATG)	 GA	8657-8902	GT	AAG
(CTG)	 AG	10234-10338	GT	TAG
(CTT)	 AG	11041-11187	GT	AGG
(AGT)	 AG	11542-11607	GT	ATG
-recovered snap_scaffold_167-snap.4-T1, initial, 8657, 8902
-recovered snap_scaffold_167-snap.4-T1, internal, 10234, 10338
-recovered snap_scaffold_167-snap.4-T1, internal, 11041, 11187
-recovered snap_scaffold_167-snap.4-T1, internal, 11542, 11607
Valid prediction for GlimmerHMM_glimmerT_59944-T1
Valid prediction for snap_scaffold_167-snap.3-T1
Valid prediction for snap_scaffold_167-snap.1-T1

-loading the search evidence (protein and EST search results, strand: +)
-scoring exons (strand: +)

** Processing features (-)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: -)
-loading gene prediction evidence. (strand: -)Valid prediction for GlimmerHMM_glimmerT_59942-T1
Valid prediction for CodingQuarry_transcript_20161-T1
Valid prediction for snap_scaffold_167-snap.2-T1
Couldn't classify 2518, 2862
Sorry, prediction pasa_asmbl_17616.p1 fails validation.
(ATG)	 GG	2518-2862	CC	CTC
Valid prediction for Augustus_model.g39701.t1
Valid prediction for Augustus_model.g39700.t1

-loading the search evidence (protein and EST search results, strand: -)
-scoring exons (strand: -)
-building DP trellis

-building trellis in range 1 - 11628
-exon list size: 32


building trellis

2.9    
5.9    
8.8    
11.8    
14.7    
17.6    
20.6    
23.5    
26.5    
29.4    
32.4    
35.3    
38.2    
41.2    
44.1    
47.1    
50.0    
52.9    
55.9    
58.8    
61.8    
64.7    
67.6    
70.6    
73.5    
76.5    
79.4    
82.4    
85.3    
88.2    
91.2    
94.1    
97.1    
-found 6 predictions from path traversal

-reporting highest scoring path thru the trellis.
-found 5 predictions persist after filtering for low support