-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~funannotate/test/fun/predict_misc/EVM/scaffold_1666

-reading genomic sequence.

** Processing features (+)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: +)
-loading gene prediction evidence. (strand: +)
-loading the search evidence (protein and EST search results, strand: +)
-scoring exons (strand: +)

** Processing features (-)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: -)
-loading gene prediction evidence. (strand: -)Couldn't classify 249, 303
Couldn't classify 1616, 1827
Sorry, prediction snap_scaffold_1666-snap.1-T1 fails validation.
(ACC)	 AG	249-303	GT	AGG
(CTG)	 AG	437-567	GT	TGG
(ACC)	 AG	1128-1369	GT	CCG
(TAT)	 AG	1616-1827	GT	AGG
-recovered snap_scaffold_1666-snap.1-T1, internal, 249, 303
-recovered snap_scaffold_1666-snap.1-T1, internal, 437, 567
-recovered snap_scaffold_1666-snap.1-T1, internal, 1128, 1369
-recovered snap_scaffold_1666-snap.1-T1, internal, 1616, 1827
Valid prediction for GlimmerHMM_glimmerT_61267-T1
Couldn't classify 437, 567
Sorry, prediction GlimmerHMM_glimmerT_61268-T1 fails validation.
(CTG)	 AG	437-567	GT	TGG
(ACC)	 AG	1128-1373	GT	GAG
-recovered GlimmerHMM_glimmerT_61268-T1, terminal, 1128, 1373
-recovered GlimmerHMM_glimmerT_61268-T1, internal, 437, 567
-recovered GlimmerHMM_glimmerT_61268-T1, internal, 1128, 1373
Couldn't classify 1993, 2077
Sorry, prediction Augustus_model.g40599.t1 fails validation.
(ATG)	 CC	252-303	GT	AGG
(CTG)	 AG	437-567	GT	TGG
(ACC)	 AG	1128-1369	GT	CCG
(TAT)	 AG	1616-1827	GT	AGG
(ACA)	 AG	1993-2077		AA
-recovered Augustus_model.g40599.t1, initial, 252, 303
-recovered Augustus_model.g40599.t1, internal, 437, 567
-recovered Augustus_model.g40599.t1, internal, 1128, 1369
-recovered Augustus_model.g40599.t1, internal, 1616, 1827
Couldn't classify 1266, 1369
Couldn't classify 1993, 2075
Sorry, prediction pasa_asmbl_17613.p1 fails validation.
(TAC)	 AG	1266-1369	GT	CCG
(TAT)	 AG	1616-1827	GT	AGG
(ACA)	 AG	1993-2075	AA	CGA
-recovered pasa_asmbl_17613.p1, internal, 1266, 1369
-recovered pasa_asmbl_17613.p1, internal, 1616, 1827

-loading the search evidence (protein and EST search results, strand: -)
-scoring exons (strand: -)
-building DP trellis

-building trellis in range 1 - 2077
-exon list size: 13


building trellis

6.7    
13.3    
20.0    
26.7    
33.3    
40.0    
46.7    
53.3    
60.0    
66.7    
73.3    
80.0    
86.7    
93.3    
-found 1 predictions from path traversal

-reporting highest scoring path thru the trellis.
-found 1 predictions persist after filtering for low support