-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~funannotate/test/fun/predict_misc/EVM/scaffold_164

-reading genomic sequence.

** Processing features (+)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: +)
-loading gene prediction evidence. (strand: +)Couldn't classify 4459, 4682
Sorry, prediction pasa_asmbl_17607.p1 fails validation.
(ATG)	 CT	3732-3792	GT	CGG
(GAA)	 AG	3905-4252	GT	AGG
(CTG)	 AG	4459-4682	TG	CCT
-recovered pasa_asmbl_17607.p1, initial, 3732, 3792
-recovered pasa_asmbl_17607.p1, internal, 3905, 4252
Valid prediction for GlimmerHMM_glimmerT_59934-T1
Valid prediction for snap_scaffold_164-snap.1-T1
Valid prediction for Augustus_model.g39694.t1
Valid prediction for CodingQuarry_transcript_20149-T1

-loading the search evidence (protein and EST search results, strand: +)
-scoring exons (strand: +)

** Processing features (-)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: -)
-loading gene prediction evidence. (strand: -)
-loading the search evidence (protein and EST search results, strand: -)
-scoring exons (strand: -)
-building DP trellis

-building trellis in range 1 - 11681
-exon list size: 10


building trellis

8.3    
16.7    
25.0    
33.3    
41.7    
50.0    
58.3    
66.7    
75.0    
83.3    
91.7    
-found 1 predictions from path traversal

-reporting highest scoring path thru the trellis.
-found 1 predictions persist after filtering for low support