-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~funannotate/test/fun/predict_misc/EVM/scaffold_1629

-reading genomic sequence.

** Processing features (+)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: +)
-loading gene prediction evidence. (strand: +)
-loading the search evidence (protein and EST search results, strand: +)
-scoring exons (strand: +)

** Processing features (-)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: -)
-loading gene prediction evidence. (strand: -)Couldn't classify 1952, 2080
Sorry, prediction Augustus_model.g40587.t1 fails validation.
(ATG)	 AC	392-479	GT	GAG
(CGT)	 AG	768-899	GT	GAG
(AGT)	 AG	1608-1736	GT	GGG
(GTT)	 AG	1952-2080	GT	GGG
-recovered Augustus_model.g40587.t1, initial, 392, 479
add_exon() Sorry, Augustus_model.g40587.t1 768-899-terminal-1 is invalid.
-recovered Augustus_model.g40587.t1, terminal, 768, 899
-recovered Augustus_model.g40587.t1, internal, 768, 899
-recovered Augustus_model.g40587.t1, internal, 1608, 1736
-recovered Augustus_model.g40587.t1, internal, 1952, 2080
Couldn't classify 768, 899
Couldn't classify 1952, 2080
Sorry, prediction snap_scaffold_1629-snap.1-T1 fails validation.
(CGT)	 AG	768-899	GT	GAG
(AGT)	 AG	1608-1736	GT	GGG
(GTT)	 AG	1952-2080	GT	GGG
add_exon() Sorry, snap_scaffold_1629-snap.1-T1 768-899-terminal-1 is invalid.
-recovered snap_scaffold_1629-snap.1-T1, terminal, 768, 899
-recovered snap_scaffold_1629-snap.1-T1, internal, 768, 899
-recovered snap_scaffold_1629-snap.1-T1, internal, 1608, 1736
-recovered snap_scaffold_1629-snap.1-T1, internal, 1952, 2080
Couldn't classify 768, 899
Sorry, prediction GlimmerHMM_glimmerT_61251-T1 fails validation.
(CGT)	 AG	768-899	GT	GAG
(AGT)	 AG	1608-2029	CC	GAC
add_exon() Sorry, GlimmerHMM_glimmerT_61251-T1 768-899-terminal-1 is invalid.
-recovered GlimmerHMM_glimmerT_61251-T1, terminal, 768, 899
-recovered GlimmerHMM_glimmerT_61251-T1, terminal, 1608, 2029
-recovered GlimmerHMM_glimmerT_61251-T1, internal, 768, 899

-loading the search evidence (protein and EST search results, strand: -)
-scoring exons (strand: -)
-building DP trellis

-building trellis in range 1 - 2119
-exon list size: 5


building trellis

14.3    
28.6    
42.9    
57.1    
71.4    
85.7    
-found 1 predictions from path traversal
GOT 5prime partial gene.

-reporting highest scoring path thru the trellis.
-found 1 predictions persist after filtering for low support