-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~funannotate/test/fun/predict_misc/EVM/scaffold_161

-reading genomic sequence.

** Processing features (+)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: +)
-loading gene prediction evidence. (strand: +)Valid prediction for Augustus_model.g39692.t1
Couldn't classify 2798, 2910
Couldn't classify 9977, 10049
Sorry, prediction snap_scaffold_161-snap.1-T1 fails validation.
(CTT)	 AG	2798-2910	GT	AAG
(ACC)	 AG	3852-4019	GT	ATG
(ACT)	 AG	9977-10049	GT	AGG
-recovered snap_scaffold_161-snap.1-T1, internal, 2798, 2910
-recovered snap_scaffold_161-snap.1-T1, internal, 3852, 4019
-recovered snap_scaffold_161-snap.1-T1, internal, 9977, 10049
Valid prediction for GlimmerHMM_glimmerT_59930-T1

-loading the search evidence (protein and EST search results, strand: +)
-scoring exons (strand: +)

** Processing features (-)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: -)
-loading gene prediction evidence. (strand: -)Valid prediction for GlimmerHMM_glimmerT_59931-T1
Couldn't classify 1111, 1414
Sorry, prediction snap_scaffold_161-snap.2-T1 fails validation.
(GAA)	 AG	1111-1414	GT	GAG
(AGT)	 AG	3215-3227	GT	AAG
-recovered snap_scaffold_161-snap.2-T1, terminal, 3215, 3227
-recovered snap_scaffold_161-snap.2-T1, internal, 1111, 1414
-recovered snap_scaffold_161-snap.2-T1, internal, 3215, 3227

-loading the search evidence (protein and EST search results, strand: -)
-scoring exons (strand: -)Error with prediction: snap lend_intergenic: 10049, rend_intergenic: 8556  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.

-building DP trellis

-building trellis in range 1 - 11782
-exon list size: 15


building trellis

5.9    
11.8    
17.6    
23.5    
29.4    
35.3    
41.2    
47.1    
52.9    
58.8    
64.7    
70.6    
76.5    
82.4    
88.2    
94.1    
-found 2 predictions from path traversal
Error with prediction: snap lend_intergenic: 10049, rend_intergenic: 8556  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
GOT 5prime partial gene.
GOT 5prime partial gene.

-reporting highest scoring path thru the trellis.
-found 2 predictions persist after filtering for low support